Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20312
         (617 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyc...    27   1.6  
SPAC3F10.05c |mug113||DUF1766 family protein|Schizosaccharomyces...    27   2.2  
SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi...    26   5.0  
SPBC1604.06c |||CBF/Mak21 family|Schizosaccharomyces pombe|chr 2...    25   8.8  
SPAC1D4.13 |byr1|ste1, ste3|MAP kinase kinase Byr1|Schizosacchar...    25   8.8  

>SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1050

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +3

Query: 432 QKKFAEHDLLKILWFALLKTM 494
           +K+F EHD+L + W  +L+ M
Sbjct: 685 KKEFVEHDILPVKWVQILEDM 705


>SPAC3F10.05c |mug113||DUF1766 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 326

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = -1

Query: 575 LLXXRCDILAVRPLLPRQK-SCTGCFCIHRFQQR 477
           LL  RC +L    L  +    C G  C++RF+Q+
Sbjct: 178 LLSERCKLLLQSELCNQDSYDCPGYICVYRFEQK 211


>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 984

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 16/51 (31%), Positives = 28/51 (54%)
 Frame = +2

Query: 281 ITTAVNSAYFHLKMETFNKPCFILIFIKESGNFSDDKVLKRTSVELQIPST 433
           +T  V   YF L      K  F  ++++E  +F  DKV   +++EL++P+T
Sbjct: 417 LTYQVKERYFLLSKSFVGKNQF-RVYLQEF-DFEADKVNLISTIELELPAT 465


>SPBC1604.06c |||CBF/Mak21 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 485

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = -2

Query: 535 YYQGKNLAQVVFVFIVFNSANHRIFSKSCSANFFCRWYLKL 413
           Y   KNL  ++ +F   + +NH I   + +A   CR Y  L
Sbjct: 10  YKSRKNLNNILVLFDYIDLSNHSIDEVNDAAAALCRVYCYL 50


>SPAC1D4.13 |byr1|ste1, ste3|MAP kinase kinase
           Byr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 340

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
 Frame = -2

Query: 478 ANHRIFSKSCS-ANFFCRWYLKLD*SPFEYFVVGKITRLLDEN*NETRLVKGFHLQMKIR 302
           +N   F + C+  N    W   LD S  E      +  L + N     LVK  ++ M  +
Sbjct: 39  SNVEAFMEQCAHMNRRPAWISDLDNSSLEV-----VRHLGEGNGGAVSLVKHRNIFMARK 93

Query: 301 TINSSSDLEWKYRL*QEISVRHH 233
           T+   SD + + ++ +E+ V HH
Sbjct: 94  TVYVGSDSKLQKQILRELGVLHH 116


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,489,002
Number of Sequences: 5004
Number of extensions: 47526
Number of successful extensions: 127
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)