Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20312
         (617 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1520 + 27415266-27415507,27415608-27415722,27415761-274158...    29   3.9  
07_03_0584 - 19690474-19690589,19690763-19690909,19691068-196911...    28   6.8  
01_06_1742 - 39585879-39585994,39586089-39586238,39586288-395863...    28   6.8  

>07_03_1520 +
           27415266-27415507,27415608-27415722,27415761-27415815,
           27415862-27417849,27418161-27418589
          Length = 942

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = +3

Query: 420 KYHRQKKFAEHDLLKILWFALLKTM 494
           K  ++K F EHDLL +L  ++L+T+
Sbjct: 568 KIPKEKTFIEHDLLPVLGMSILETL 592


>07_03_0584 -
           19690474-19690589,19690763-19690909,19691068-19691116,
           19691240-19691365,19691473-19692651
          Length = 538

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = -1

Query: 113 CFSWKSHDIVIWTA 72
           CFSWKS   V WTA
Sbjct: 520 CFSWKSFHYVCWTA 533


>01_06_1742 -
           39585879-39585994,39586089-39586238,39586288-39586375,
           39586479-39586640,39586753-39586877,39586992-39587030,
           39587290-39587476,39587643-39587713,39589371-39589564,
           39589656-39589767,39589899-39590082,39590177-39590503,
           39590780-39591061,39591148-39591621,39591730-39591813,
           39591850-39591939,39592024-39592247,39592503-39592600,
           39592679-39593169,39593249-39593520,39594266-39594522,
           39594672-39594890,39595007-39595167,39595249-39595441,
           39595528-39595633,39595947-39596121,39596404-39596556,
           39596663-39596794,39597120-39597184,39597754-39597819,
           39598433-39598511,39598587-39598767,39598864-39598976
          Length = 1889

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +2

Query: 392 VLKRTSVELQIPSTKEICGARFTENSMVCAVENDEYKNNLCKIFALVI 535
           V  R  +E  +PS KE+C  R+ ++  VC  +  E    LC  +  +I
Sbjct: 172 VSDREEIEFCVPSAKEMC--RYYDSKPVCFEDLSEELGVLCSKYDALI 217


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,867,674
Number of Sequences: 37544
Number of extensions: 285526
Number of successful extensions: 514
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 509
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 514
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)