Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20312
         (617 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24279| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.25 
SB_45912| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.3  
SB_5939| Best HMM Match : BAH (HMM E-Value=7.9e-18)                    30   1.3  
SB_43853| Best HMM Match : AAA_5 (HMM E-Value=0)                       28   5.3  
SB_20869| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.3  
SB_9645| Best HMM Match : DUF101 (HMM E-Value=4.3)                     28   7.0  
SB_40600| Best HMM Match : DUF667 (HMM E-Value=0.35)                   28   7.0  
SB_15458| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  

>SB_24279| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1095

 Score = 32.7 bits (71), Expect = 0.25
 Identities = 19/61 (31%), Positives = 29/61 (47%)
 Frame = +2

Query: 347 ILIFIKESGNFSDDKVLKRTSVELQIPSTKEICGARFTENSMVCAVENDEYKNNLCKIFA 526
           IL ++ E GN S D    R   EL +P ++++    F   +M   +      NN CK+F 
Sbjct: 592 ILGYVVEEGNISPDPERLRPLRELPVPISEQMPRIVFLLLTMDTRILGSNQANNPCKVFP 651

Query: 527 L 529
           L
Sbjct: 652 L 652


>SB_45912| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 187

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +1

Query: 181 RNKRLFKWFDRPITMHLNGGALIFP 255
           RN++L  W   P  M L+GGAL+ P
Sbjct: 42  RNQQLLAWQQHPELMQLHGGALVSP 66


>SB_5939| Best HMM Match : BAH (HMM E-Value=7.9e-18)
          Length = 1086

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +1

Query: 181  RNKRLFKWFDRPITMHLNGGALIFP 255
            RN++L  W   P  M L+GGAL+ P
Sbjct: 942  RNQQLLAWQQHPELMQLHGGALVSP 966


>SB_43853| Best HMM Match : AAA_5 (HMM E-Value=0)
          Length = 2065

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +1

Query: 187  KRLFKWFDRPITMHLNGGALIFPAKDDISIQD 282
            ++ F+W D P+ + + GGA+     D+IS+ D
Sbjct: 1265 QKFFEWCDGPLVLAMKGGAMFL--VDEISLAD 1294


>SB_20869| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1212

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -1

Query: 101 KSHDIVIWTADVNRRCDQPI 42
           +SHD V W  D N R D P+
Sbjct: 478 RSHDYVFWCGDFNYRIDMPM 497


>SB_9645| Best HMM Match : DUF101 (HMM E-Value=4.3)
          Length = 360

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
 Frame = +2

Query: 347 ILIFIKESGNFSDDKVLKRTSVELQIPS-TKEI--CGARFTENSMVCAVENDEYKN-NLC 514
           IL ++ E GN S D    R   EL +PS +K +  C   F+  S      +D  K    C
Sbjct: 37  ILGYVVEEGNISPDPERLRPLRELPVPSDSKSLNRCLGLFSYYSQWIPAYSDRIKQITSC 96

Query: 515 KIFAL 529
           K+F L
Sbjct: 97  KVFPL 101


>SB_40600| Best HMM Match : DUF667 (HMM E-Value=0.35)
          Length = 449

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 24/72 (33%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
 Frame = +2

Query: 329 FNKPCF-ILIFIKESGNFSDDKVLKRTSVELQIPS-TKEI--CGARFTENSMVCAVENDE 496
           F+  C  IL ++ E GN S D    R   EL +PS +K +  C   F+  S      +D 
Sbjct: 134 FSTRCLPILGYVVEEGNISPDPERLRPLRELPVPSDSKSLNRCLGLFSYYSQWIPAYSDR 193

Query: 497 YKN-NLCKIFAL 529
            K    CK+F L
Sbjct: 194 IKPITSCKVFPL 205


>SB_15458| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 662

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 16/50 (32%), Positives = 29/50 (58%)
 Frame = -3

Query: 432 VDGI*SSTEVRLSTLSSEKLPDSLMKIRMKQGLLKVSIFK*KYALLTAVV 283
           +DG  SS E +   LS EK  +++++  +++   K+S F+ K   LTA +
Sbjct: 41  IDGYISSMEKQKKKLSGEKALNAVLQRDVQEMCTKISNFEVKEEKLTAEI 90


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,530,840
Number of Sequences: 59808
Number of extensions: 347539
Number of successful extensions: 681
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 648
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 681
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1524174750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)