Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20312
         (617 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                24   1.0  
DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.              23   3.2  
DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.              23   3.2  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        21   9.6  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +3

Query: 468 LWFALLKTMNTKTTCARFLPW 530
           LW  LLK +  +  C R++ W
Sbjct: 460 LWEFLLKLLQDREYCPRYIKW 480


>DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.
          Length = 135

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = +2

Query: 317 KMETFNKPCFILIF--IKESGNFSDDKVLKRTSVEL 418
           K + +N+ C +  F  + ESGNF ++ V + TS+ L
Sbjct: 58  KPQRYNE-CILKQFNIVDESGNFKENIVQELTSIYL 92


>DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.
          Length = 135

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = +2

Query: 317 KMETFNKPCFILIF--IKESGNFSDDKVLKRTSVEL 418
           K + +N+ C +  F  + ESGNF ++ V + TS+ L
Sbjct: 58  KPQRYNE-CILKQFNIVDESGNFKENIVQELTSIYL 92


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +1

Query: 574 SAKPMLN*TVTHH 612
           SA PM+N T+ HH
Sbjct: 162 SADPMVNYTLGHH 174


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,894
Number of Sequences: 438
Number of extensions: 2915
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18337950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)