Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20312
         (617 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g39730.1 68418.m04811 avirulence-responsive protein-related /...    29   3.3  
At5g39720.1 68418.m04809 avirulence-responsive protein-related /...    27   10.0 
At5g23110.1 68418.m02703 zinc finger (C3HC4-type RING finger) fa...    27   10.0 
At1g79840.1 68414.m09327 homeobox-leucine zipper protein 10 (HB-...    27   10.0 

>At5g39730.1 68418.m04811 avirulence-responsive protein-related /
           avirulence induced gene (AIG) protein-related similar to
           SP|P54121 AIG2 protein {Arabidopsis thaliana}
          Length = 172

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 516 LHRLFLYSSFSTAQTIEFSVNRAPQI 439
           LH +F+Y SF     I   +NR P+I
Sbjct: 9   LHNIFVYGSFQEPDIIHVMLNRIPEI 34


>At5g39720.1 68418.m04809 avirulence-responsive protein-related /
           avirulence induced gene (AIG) protein-related similar to
           SP|P54121 AIG2 protein {Arabidopsis thaliana}
          Length = 165

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -3

Query: 516 LHRLFLYSSFSTAQTIEFSVNRAPQI 439
           LH +F+Y SF     I   ++R P+I
Sbjct: 9   LHNVFVYGSFQDPDVINVMLDRTPEI 34


>At5g23110.1 68418.m02703 zinc finger (C3HC4-type RING finger) family
            protein contains Pfam profile: PF00097 zinc finger, C3HC4
            type (RING finger)
          Length = 4706

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 21/76 (27%), Positives = 31/76 (40%)
 Frame = +2

Query: 263  TIFPFKITTAVNSAYFHLKMETFNKPCFILIFIKESGNFSDDKVLKRTSVELQIPSTKEI 442
            T+F F +  A  +   H+K ET+     + +F   SG  S+  +  R    + I  TKE 
Sbjct: 1557 TLFRFPLRNASVAPRSHIKKETYAPEDVLSLFTSFSGVVSEALIFLRNVKTVSI-FTKEG 1615

Query: 443  CGARFTENSMVCAVEN 490
             G        VC   N
Sbjct: 1616 AGHEMQLLHRVCKDHN 1631


>At1g79840.1 68414.m09327 homeobox-leucine zipper protein 10 (HB-10)
           / HD-ZIP transcription factor 10 / homeobox protein
           (GLABRA2) identical to homeobox protein (GLABRA2)
           (homeobox-leucine zipper protein ATHB-10) (HD-ZIP
           protein ATHB-10) GB:P46607 [Arabidopsis thaliana]
          Length = 747

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 5/72 (6%)
 Frame = -3

Query: 417 SSTEVRLSTLSSEKLPDSLMKIRMKQGLLKVSIFK*KYALLTAVV-----ILNGNIVFSR 253
           S+TE   S L   KLP   +      G  KV+  +      + V      ++N  + F  
Sbjct: 414 SNTEKEASLLKCRKLPSGCIIEDTSNGHSKVTWVEHLDVSASTVQPLFRSLVNTGLAFGA 473

Query: 252 KYQCATIQMHCD 217
           ++  AT+Q+HC+
Sbjct: 474 RHWVATLQLHCE 485


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,928,646
Number of Sequences: 28952
Number of extensions: 243394
Number of successful extensions: 572
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 554
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 572
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1246162608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)