Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20311
(589 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3 s... 35 0.010
SPCC757.05c |||acetylornithine deacetylase |Schizosaccharomyces ... 28 0.88
SPAC25B8.03 |||phosphatidylserine decarboxylase|Schizosaccharomy... 27 2.7
SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharom... 27 2.7
SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces pombe... 27 2.7
SPBC11B10.07c |||CDC50 domain protein|Schizosaccharomyces pombe|... 26 3.5
SPAC824.08 |gda1|gdp1|guanosine-diphosphatase Gda1|Schizosacchar... 26 4.7
SPAC6F12.08c |||exocyst complex subunit Exo84|Schizosaccharomyce... 26 4.7
SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces pom... 25 6.2
SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy... 25 6.2
SPBP8B7.12c |fta3|sma3|Sim4 and Mal2 associated |Schizosaccharom... 25 8.2
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po... 25 8.2
>SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3
subunit Alp6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 821
Score = 34.7 bits (76), Expect = 0.010
Identities = 17/55 (30%), Positives = 27/55 (49%)
Frame = +2
Query: 236 IEFNSSNILSGNKSIHDAVLKIFTSVNKVFIHQLCTWLLYGELKDVYQEFFISKR 400
I+ S + G+ I + KI T + + W+ GEL D YQEFF+ ++
Sbjct: 346 IQVVSKYNVHGDPLIQELSDKILTEITGPLYEMIENWIYKGELVDPYQEFFVKEK 400
>SPCC757.05c |||acetylornithine deacetylase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 400
Score = 28.3 bits (60), Expect = 0.88
Identities = 18/43 (41%), Positives = 26/43 (60%)
Frame = +3
Query: 66 LLSYKKTLVEVESLVIGNHNYTLSYVYSYIEKYQGLFNTLNRI 194
L+S K+LVE+ESL GN ++ SY+E +GL L R+
Sbjct: 61 LISLHKSLVEIESLG-GNEVNVSDFLKSYLES-KGLTVELQRV 101
>SPAC25B8.03 |||phosphatidylserine decarboxylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 516
Score = 26.6 bits (56), Expect = 2.7
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +1
Query: 1 QQHTVTDMDSIPKH*VKASLKSYYHI 78
Q+ VTD+DS+P H ++ K +Y +
Sbjct: 336 QEADVTDIDSLPWHNIRPGNKLFYSV 361
>SPCC132.01c ||SPCC1322.17c|DUF814 family
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1021
Score = 26.6 bits (56), Expect = 2.7
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -2
Query: 489 NVSCNVETRVLSQTLEEDGVDNKVSDE 409
N S NV+T +EEDGV +S E
Sbjct: 846 NDSSNVQTPTAESEIEEDGVSEPISAE 872
>SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 719
Score = 26.6 bits (56), Expect = 2.7
Identities = 10/46 (21%), Positives = 27/46 (58%)
Frame = +3
Query: 27 LYTQALSEGITEVLLSYKKTLVEVESLVIGNHNYTLSYVYSYIEKY 164
L+ + L+ + + + K ++ + + ++G+H T+ +YS++ KY
Sbjct: 321 LFEKHLASSKSRLSMDQKLVVLRLLTRLVGSHKLTVLGLYSFLMKY 366
>SPBC11B10.07c |||CDC50 domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 371
Score = 26.2 bits (55), Expect = 3.5
Identities = 24/79 (30%), Positives = 34/79 (43%), Gaps = 9/79 (11%)
Frame = +3
Query: 33 TQALSEGITEVLLSYK---------KTLVEVESLVIGNHNYTLSYVYSYIEKYQGLFNTL 185
T AL GI E+ ++Y KT++ + VIG NY L +Y I +
Sbjct: 286 TTALQPGIYEMNITYNFPVTEYKGTKTIMFSTTSVIGGKNYFLGILYFVIGGLCAASGVI 345
Query: 186 NRIITTIKERRLMGCQILS 242
I IK RR+ + LS
Sbjct: 346 LSIACLIKPRRVGDPRYLS 364
>SPAC824.08 |gda1|gdp1|guanosine-diphosphatase
Gda1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 556
Score = 25.8 bits (54), Expect = 4.7
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +3
Query: 99 ESLVIGNHNYTLSYVYSYIEKYQ 167
ESLV G+H Y L Y E YQ
Sbjct: 303 ESLVDGDHKYVLDYNGEQYELYQ 325
>SPAC6F12.08c |||exocyst complex subunit Exo84|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 25.8 bits (54), Expect = 4.7
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +2
Query: 182 IEQNYNNY*RKEINGLSDIEFNSSNILSGNKSIHDAVLKIFT 307
++ Y N+ ++I L D+ N L+ ++S DAV KI T
Sbjct: 509 LDPAYRNWIFQQIEALVDLIENQYKHLAHDRSYTDAVSKIMT 550
>SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1188
Score = 25.4 bits (53), Expect = 6.2
Identities = 12/41 (29%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +1
Query: 457 QNSCF-YIAGDIRLWLHTHPTLIPHFMPLSLAQEIFVYRKN 576
Q S F YI + W TH +I +PL+++ ++++ +N
Sbjct: 163 QYSLFAYIFSLVISWFFTHSIIISAVLPLAISSCMYLWMQN 203
>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 874
Score = 25.4 bits (53), Expect = 6.2
Identities = 18/66 (27%), Positives = 30/66 (45%)
Frame = +2
Query: 212 KEINGLSDIEFNSSNILSGNKSIHDAVLKIFTSVNKVFIHQLCTWLLYGELKDVYQEFFI 391
K N ++D N+ + K+ + ++K + F + C WLL G VY + I
Sbjct: 746 KLTNNIADALKNNKVNIGTIKASLEVLVKCIAPIIPCFSSE-C-WLLLGHNSSVYSNWPI 803
Query: 392 SKRKDD 409
SK K +
Sbjct: 804 SKNKKE 809
>SPBP8B7.12c |fta3|sma3|Sim4 and Mal2 associated
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 220
Score = 25.0 bits (52), Expect = 8.2
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = -2
Query: 324 NTLFTLVNIFKTAS*IDLLPLKIFDELNSIS--DSPL 220
N F+++N T S + L +++DE NS+ SPL
Sbjct: 69 NAAFSILNFMTTNSLVGQLYQRLYDESNSLGFISSPL 105
>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1564
Score = 25.0 bits (52), Expect = 8.2
Identities = 17/72 (23%), Positives = 34/72 (47%)
Frame = +3
Query: 42 LSEGITEVLLSYKKTLVEVESLVIGNHNYTLSYVYSYIEKYQGLFNTLNRIITTIKERRL 221
+ E + +LL K + + + + N ++Y Y L+NTLNR+++ KE
Sbjct: 1270 VKEHLQSILLLTWKAITTTKFSIYEDSNGEMAY---YRPLLHVLYNTLNRLLSEEKENLS 1326
Query: 222 MGCQILSLIHQI 257
+ +S + Q+
Sbjct: 1327 LSVGFVSGLLQL 1338
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,399,142
Number of Sequences: 5004
Number of extensions: 47600
Number of successful extensions: 120
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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