Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20311
         (589 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0310 + 16578679-16580936,16581027-16581294                       33   0.22 
12_01_0824 + 7601811-7602598,7603690-7605730,7605762-7605767,760...    29   3.6  
08_02_0531 + 18256597-18256836,18257637-18257735,18258038-182581...    28   4.8  
05_03_0670 + 16819189-16819481,16821687-16821803,16822073-168221...    28   6.3  

>09_04_0310 + 16578679-16580936,16581027-16581294
          Length = 841

 Score = 32.7 bits (71), Expect = 0.22
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = +2

Query: 266 GNKSIHDAVLKIFTSVNKVFIHQLCTWLLYGELKDVYQEFFI 391
           G+ +  D + ++   V       + +W+L GEL+DV+ EFFI
Sbjct: 351 GDPTFQDFMGRLLRRVCSPLFEMVRSWVLEGELEDVFAEFFI 392


>12_01_0824 +
           7601811-7602598,7603690-7605730,7605762-7605767,
           7606142-7606291
          Length = 994

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
 Frame = +1

Query: 301 IYKCEQSIHTSTMYLASLWGIKGCVSRVLHI--KKKR*LVRNFIVNT 435
           +YK  Q + T   +L + W IK   +R+  I  ++KR  V ++I NT
Sbjct: 99  LYKASQFLKTCRAHLEAAWQIKELKTRLQEINERRKRYKVGHYISNT 145


>08_02_0531 +
           18256597-18256836,18257637-18257735,18258038-18258184,
           18258295-18258427,18258521-18258585,18258792-18258962,
           18259095-18259199,18259495-18259602,18259792-18260088,
           18260191-18260256,18260477-18260679,18261178-18261232,
           18261318-18261503,18261701-18261985
          Length = 719

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +2

Query: 215 EINGLSDIEFNSSNILSGNKSIHDA 289
           ++NG+SD+E     + S  KS+HDA
Sbjct: 311 DVNGISDVEKVKEEMASLKKSLHDA 335


>05_03_0670 +
           16819189-16819481,16821687-16821803,16822073-16822136,
           16822566-16822724,16823014-16823165,16825137-16825272
          Length = 306

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +3

Query: 162 YQGLFNTLNRIITTIKERRLMGCQI 236
           Y  +FN+L+ IITT+ +  L+G  I
Sbjct: 234 YPSMFNSLSLIITTVMDSLLLGANI 258


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,762,042
Number of Sequences: 37544
Number of extensions: 248255
Number of successful extensions: 603
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 603
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)