Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20311
(589 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_48377| Best HMM Match : Spc97_Spc98 (HMM E-Value=8.3e-26) 41 9e-04
SB_59351| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.40
SB_37303| Best HMM Match : Spc97_Spc98 (HMM E-Value=0) 29 2.8
SB_43370| Best HMM Match : RhoGAP (HMM E-Value=1.6e-18) 28 4.9
SB_29566| Best HMM Match : HypA (HMM E-Value=0.38) 28 4.9
SB_13015| Best HMM Match : rve (HMM E-Value=0.00017) 28 4.9
SB_58168| Best HMM Match : Podoplanin (HMM E-Value=1.1) 28 6.5
SB_51671| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_49188| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_6643| Best HMM Match : Antimicrobial_8 (HMM E-Value=0.27) 28 6.5
SB_28153| Best HMM Match : Sec23_trunk (HMM E-Value=0.59) 28 6.5
SB_13336| Best HMM Match : Pox_A32 (HMM E-Value=0.049) 28 6.5
SB_15813| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
SB_12718| Best HMM Match : rve (HMM E-Value=0.0031) 27 8.6
SB_8164| Best HMM Match : rve (HMM E-Value=0.00069) 27 8.6
SB_48642| Best HMM Match : EFG_IV (HMM E-Value=7.1) 27 8.6
SB_38996| Best HMM Match : Pepsin-I3 (HMM E-Value=1.7) 27 8.6
SB_14139| Best HMM Match : E3_binding (HMM E-Value=2.4) 27 8.6
SB_8696| Best HMM Match : Pox_A32 (HMM E-Value=0.16) 27 8.6
>SB_48377| Best HMM Match : Spc97_Spc98 (HMM E-Value=8.3e-26)
Length = 495
Score = 40.7 bits (91), Expect = 9e-04
Identities = 20/49 (40%), Positives = 30/49 (61%)
Frame = +3
Query: 24 GLYTQALSEGITEVLLSYKKTLVEVESLVIGNHNYTLSYVYSYIEKYQG 170
GLY QA G+ EVL Y++ L+ +E V+ + N LS+V +EK +G
Sbjct: 79 GLYIQAFCSGLDEVLQGYRRELLSLERDVLTDPNLPLSHVEHRLEKAKG 127
Score = 36.7 bits (81), Expect = 0.014
Identities = 22/57 (38%), Positives = 30/57 (52%)
Frame = +2
Query: 227 LSDIEFNSSNILSGNKSIHDAVLKIFTSVNKVFIHQLCTWLLYGELKDVYQEFFISK 397
L DI + S + G + DA+ +I + V QL WLL+G L D + EF ISK
Sbjct: 130 LLDILYQSC--ICGVPDVKDALERILFMCHGVLYQQLSAWLLHGLLIDRHDEFLISK 184
>SB_59351| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 119
Score = 31.9 bits (69), Expect = 0.40
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = -2
Query: 156 QCNYRHMIKCSCDSLLLEIQLLQVFSYMIV 67
QC YR+M C C S++ + L+ V S++IV
Sbjct: 55 QCKYRYMDGCLCLSIVERVNLILVESFLIV 84
>SB_37303| Best HMM Match : Spc97_Spc98 (HMM E-Value=0)
Length = 661
Score = 29.1 bits (62), Expect = 2.8
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +2
Query: 344 WLLYGELKDVYQEFFI 391
W+ GEL+D YQEFFI
Sbjct: 370 WVYEGELEDQYQEFFI 385
>SB_43370| Best HMM Match : RhoGAP (HMM E-Value=1.6e-18)
Length = 865
Score = 28.3 bits (60), Expect = 4.9
Identities = 13/50 (26%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Frame = +3
Query: 75 YKKTLVEVESLVIGNHNYTLSYVYSYIEKYQGLFNTLNRII-TTIKERRL 221
+KK+L E + +I +++ +++ S KY+ + ++ I+ TIK+ R+
Sbjct: 535 FKKSLQEFHAFLISEYSWVMNHDKSVSLKYEDMCSSFEEILKKTIKKERI 584
>SB_29566| Best HMM Match : HypA (HMM E-Value=0.38)
Length = 701
Score = 28.3 bits (60), Expect = 4.9
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = +3
Query: 27 LYTQALSEGITEVLLSYKKTLVEVESLVIGNHNYTLSYVYSYIE-KYQGL 173
LY +ALSE L ++ TL VE +V+G+ LSY +E +Y+ L
Sbjct: 85 LYPRALSEA-----LLFENTLATVEQVVVGSDATKLSYGIKNLELEYESL 129
>SB_13015| Best HMM Match : rve (HMM E-Value=0.00017)
Length = 960
Score = 28.3 bits (60), Expect = 4.9
Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Frame = +3
Query: 27 LYTQALSEGITEVLLSYKKTLVEVESLVIGNHNYTLSY-VYSYIEKYQGL 173
LY++ALSE L +K TL V+ +V+G+ LSY + + + +Y+ L
Sbjct: 57 LYSRALSEA-----LLFKITLATVDQVVVGSDATKLSYAIKNLVLEYESL 101
>SB_58168| Best HMM Match : Podoplanin (HMM E-Value=1.1)
Length = 506
Score = 27.9 bits (59), Expect = 6.5
Identities = 17/58 (29%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Frame = +3
Query: 3 TTHSHRYGLYTQALSEGITEVLLSYKKTLVEVESLVIGNHNYTLSYVYSYIE-KYQGL 173
T+++ LY ++ ++E LL ++ TL V+ +V+G+ LSY +E +Y+ L
Sbjct: 97 TSNAKENALYAAHGAKALSEALL-FEITLATVDQVVVGSDATKLSYGIKNLELEYESL 153
>SB_51671| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 665
Score = 27.9 bits (59), Expect = 6.5
Identities = 16/38 (42%), Positives = 23/38 (60%)
Frame = +3
Query: 27 LYTQALSEGITEVLLSYKKTLVEVESLVIGNHNYTLSY 140
LY +ALSE L ++ TL V+ +V+G+H LSY
Sbjct: 44 LYPRALSEA-----LLFEITLATVDQVVVGSHATKLSY 76
>SB_49188| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 716
Score = 27.9 bits (59), Expect = 6.5
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = +3
Query: 27 LYTQALSEGITEVLLSYKKTLVEVESLVIGNHNYTLSYVYSYIE-KYQGLFN 179
LY +ALSE L ++ TL V+ +V+G+ LSY +E +Y+ L N
Sbjct: 90 LYPRALSEA-----LLFEITLATVDQVVVGSDTTKLSYGIKNLELEYESLRN 136
>SB_6643| Best HMM Match : Antimicrobial_8 (HMM E-Value=0.27)
Length = 251
Score = 27.9 bits (59), Expect = 6.5
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +3
Query: 432 HHLLLMSVTKLLFLHCRRH*VVVTHSSNTDTTFHAIVISTRNFCLSE 572
+H +SVT L+ ++ RRH V H + T H I++ R +S+
Sbjct: 147 YHYESLSVTHLIIVYERRHAVSGYHYKSLSVT-HLIIVYERRHAVSD 192
>SB_28153| Best HMM Match : Sec23_trunk (HMM E-Value=0.59)
Length = 246
Score = 27.9 bits (59), Expect = 6.5
Identities = 14/43 (32%), Positives = 27/43 (62%)
Frame = +3
Query: 45 SEGITEVLLSYKKTLVEVESLVIGNHNYTLSYVYSYIEKYQGL 173
++ ++E LL ++ TL V+ +V+G+ LSY +E+Y+ L
Sbjct: 157 AKALSEALL-FEITLATVDLVVVGSDATKLSYGVKNLEEYESL 198
>SB_13336| Best HMM Match : Pox_A32 (HMM E-Value=0.049)
Length = 960
Score = 27.9 bits (59), Expect = 6.5
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = +3
Query: 27 LYTQALSEGITEVLLSYKKTLVEVESLVIGNHNYTLSYVYSYIE-KYQGL 173
LY +ALSE L ++ TL V+ +V+GN LSY +E +Y+ L
Sbjct: 174 LYPRALSEA-----LLFEITLATVDQVVVGNDATKLSYGIKNLELEYESL 218
>SB_15813| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 325
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +3
Query: 120 HNYTLSYVYSYIEKYQGLFNTLNRIITTI 206
+ YT+ + I+KYQG T R ITT+
Sbjct: 296 NRYTIVMLQPLIDKYQGHVTTFRRHITTL 324
>SB_12718| Best HMM Match : rve (HMM E-Value=0.0031)
Length = 1667
Score = 27.5 bits (58), Expect = 8.6
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = +3
Query: 27 LYTQALSEGITEVLLSYKKTLVEVESLVIGNHNYTLSYVYSYIE-KYQGL 173
LY +ALSE L +K TL V+ +V+G+ LSY +E +Y+ L
Sbjct: 519 LYPRALSEA-----LIFKITLATVDQVVVGSDATKLSYGIKTLELEYESL 563
>SB_8164| Best HMM Match : rve (HMM E-Value=0.00069)
Length = 1117
Score = 27.5 bits (58), Expect = 8.6
Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Frame = +3
Query: 27 LYTQALSEGITEVLLSYKKTLVEVESLVIGNHNYTLSYVYSYIE-KYQG 170
LY +ALSE L ++ TL V+ +V+G++ LSY +E +Y+G
Sbjct: 157 LYPRALSEA-----LLFEVTLATVDLVVVGSYATKLSYGIKNLELEYEG 200
>SB_48642| Best HMM Match : EFG_IV (HMM E-Value=7.1)
Length = 508
Score = 27.5 bits (58), Expect = 8.6
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = +1
Query: 292 FENIYKCEQSIHTSTMYLASLWGIKGCVSRVLHI 393
F + C ++ + ++ S+ G+KG V R LH+
Sbjct: 84 FGEVLACLTFLYAALVHADSVLGLKGAVKRALHV 117
>SB_38996| Best HMM Match : Pepsin-I3 (HMM E-Value=1.7)
Length = 865
Score = 27.5 bits (58), Expect = 8.6
Identities = 17/44 (38%), Positives = 24/44 (54%)
Frame = +3
Query: 27 LYTQALSEGITEVLLSYKKTLVEVESLVIGNHNYTLSYVYSYIE 158
LY +ALSE L ++ TL V+ +V+GN LSY +E
Sbjct: 174 LYPRALSEA-----LLFEITLATVDQVVVGNDATKLSYCIKNLE 212
>SB_14139| Best HMM Match : E3_binding (HMM E-Value=2.4)
Length = 301
Score = 27.5 bits (58), Expect = 8.6
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = +3
Query: 27 LYTQALSEGITEVLLSYKKTLVEVESLVIGNHNYTLSYVYSYIE-KYQGL 173
LY +ALSE L +K TL V+ +V+G+ LSY +E +Y+ L
Sbjct: 149 LYPRALSEA-----LIFKITLATVDQVVVGSDATKLSYGIKTLELEYESL 193
>SB_8696| Best HMM Match : Pox_A32 (HMM E-Value=0.16)
Length = 1152
Score = 27.5 bits (58), Expect = 8.6
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = +3
Query: 27 LYTQALSEGITEVLLSYKKTLVEVESLVIGNHNYTLSYVYSYIE-KYQGL 173
LY +ALSE L ++ TL V+ +V+G+ LSY + +E +Y+ L
Sbjct: 154 LYPRALSEA-----LLFEITLATVDQVVVGSDATKLSYGFKNLELEYESL 198
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,117,955
Number of Sequences: 59808
Number of extensions: 323198
Number of successful extensions: 786
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 706
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 785
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1422302661
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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