Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20311
         (589 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U32305-15|AAK18858.4|  567|Caenorhabditis elegans Hypothetical p...    28   5.7  

>U32305-15|AAK18858.4|  567|Caenorhabditis elegans Hypothetical
           protein B0336.11a protein.
          Length = 567

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 35/156 (22%), Positives = 55/156 (35%), Gaps = 3/156 (1%)
 Frame = +3

Query: 66  LLSYKKTLVEVESLVIGNHNYTLSYVYSYIEKYQGLFNTLNRIITTIKERRLM---GCQI 236
           LLS K  L      + G        ++  + KY+   +   ++ T   ER  M   GCQ 
Sbjct: 94  LLSLKPLLDNQLMYLHGKDLQNRHMLWIMMNKYKNGDDGFEKLFTFWIERHYMEYKGCQP 153

Query: 237 LSLIHQIF*VATSRFMMPF*KYLQV*TKYSYINYVLGFFMGN*RMCIKSSSYQKEKMTRQ 416
           L++   +             K++   +KY Y N +    +      + +S          
Sbjct: 154 LTVFIDMTGTGLKNMSFDAMKFIIHSSKYYYPNSIESILIFENPAILNASWKVIGSWLES 213

Query: 417 KLYCQHHLLLMSVTKLLFLHCRRH*VVVTHSSNTDT 524
               Q H LL  VTKL   H      ++ H   TDT
Sbjct: 214 SAASQRHDLLTFVTKLSVTHYVPKSHLLEHQGGTDT 249


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,122,181
Number of Sequences: 27780
Number of extensions: 261604
Number of successful extensions: 615
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 615
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1237082886
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)