Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20310
         (560 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0171 + 6126685-6127107,6127237-6127581,6127701-6127997,612...    28   5.9  

>03_02_0171 +
           6126685-6127107,6127237-6127581,6127701-6127997,
           6129763-6129990,6130716-6131036
          Length = 537

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +3

Query: 96  LNCAQTSGENAALA*RAVFKTHQNNFDRQASSAR 197
           L   + SG  A  + R + +++  NFDRQASS R
Sbjct: 172 LRVEKESGRRAVSSRRELQRSNGRNFDRQASSLR 205


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,291,502
Number of Sequences: 37544
Number of extensions: 129876
Number of successful extensions: 144
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1281410928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)