Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20309
         (727 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory recept...    24   1.4  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    23   1.9  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          22   5.8  
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    21   7.7  
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    21   7.7  

>AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory receptor
           candidate 41 protein.
          Length = 398

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +1

Query: 229 INCLCVIKTLSPYICY*IYKNYSMILF 309
           I CLC+    + +  +  Y N+S+ LF
Sbjct: 52  IGCLCIWSIFNKWNQFRSYSNFSVFLF 78


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -3

Query: 443 DRSYPSKAHLRKPMLYSCQI 384
           +R  P+  HLRK  ++SC I
Sbjct: 300 ERLGPAGVHLRKKNIHSCHI 319


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +1

Query: 187 YGPEKRVSIP 216
           YGPEK  SIP
Sbjct: 203 YGPEKSASIP 212


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -2

Query: 255 GFDYT*TINIESKRNGHPLFRP 190
           GFD T   N+  K NG  L+ P
Sbjct: 99  GFDGTFQTNVVVKHNGSCLYVP 120


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -2

Query: 255 GFDYT*TINIESKRNGHPLFRP 190
           GFD T   N+  K NG  L+ P
Sbjct: 99  GFDGTFQTNVVVKHNGSCLYVP 120


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,880
Number of Sequences: 336
Number of extensions: 4770
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19363530
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)