Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20309
         (727 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce...    30   0.39 
SPAC24B11.11c |sid2||Sid2p-Mob1p kinase complex|Schizosaccharomy...    27   2.7  
SPAP8A3.02c |||2 OG-Fe|Schizosaccharomyces pombe|chr 1|||Manual        27   2.7  
SPAP27G11.12 |||human down-regulated in multiple cancers-1 homol...    26   6.3  
SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy...    26   6.3  
SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr 3|...    26   6.3  

>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 960

 Score = 29.9 bits (64), Expect = 0.39
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = +2

Query: 566 VLRRHTEAWQPVYGMVWTRVWESLLLHRDEVVLSHFKSIIS 688
           VLR  T  +  V+G   T+V    L  R +V ++HFK+I++
Sbjct: 564 VLRFVTSQYLEVFGTCLTKVLSGSLCIRSDVDMTHFKNILN 604


>SPAC24B11.11c |sid2||Sid2p-Mob1p kinase complex|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 607

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +1

Query: 1   HTSHVIRY-IASPIPRPAPRGWQLYSYETKHVW 96
           H+ H+ +  IASPIPR   R  +L SY+  + W
Sbjct: 75  HSKHISKLPIASPIPRGLDRSGEL-SYKDNNHW 106


>SPAP8A3.02c |||2 OG-Fe|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 225

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
 Frame = +1

Query: 100 KGLDTRP*NPKKKAKRLLLHSLPSWTI*IYGPEKR--VSIPF*FNINCL 240
           +G++  P    +  +R L++++P   + IYG  K+  + IPF  +INCL
Sbjct: 49  EGINYYPNCLPESVQRNLINNVPKELLSIYGSGKQSHLYIPFPAHINCL 97


>SPAP27G11.12 |||human down-regulated in multiple cancers-1 homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 797

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +2

Query: 566 VLRRHTEAWQPVYGMVWTRVW 628
           VLR H E   P + ++W R+W
Sbjct: 14  VLRLHEERNIPKFDLIWERLW 34


>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 874

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
 Frame = +3

Query: 123 KSKKKSETFIITQLTVVDDMNIWAGKEGVHSFLIQY*LSMCNQNPITIYLLL-NIQKLFN 299
           + KK S+    T+LT+VDD N    +   + F+ Q   S   +N  ++ L++ +  KL N
Sbjct: 692 REKKMSDAMRQTKLTIVDDHNSRKLESQYNEFISQ--CSAHYENVFSLNLVISDAMKLTN 749

Query: 300 DI 305
           +I
Sbjct: 750 NI 751


>SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 834

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -3

Query: 263 GDRVLITHRQLILNQKGMDTLFSGPYIHIVHDGK-LCNNK 147
           G RV     QLI N K +   F   +++ V+DG+ +C +K
Sbjct: 49  GSRVPRKQSQLIWNSKEVKQYFGSSWMNSVYDGRSMCWSK 88


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,279,878
Number of Sequences: 5004
Number of extensions: 72193
Number of successful extensions: 178
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)