Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20309
         (727 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0438 - 17737040-17737122,17737373-17737496,17737897-177381...    29   3.8  
02_02_0093 + 6692957-6693536,6693671-6694077,6694198-6694785           29   5.0  

>11_04_0438 -
           17737040-17737122,17737373-17737496,17737897-17738182,
           17738265-17738397,17738742-17738953,17739455-17739816,
           17739907-17739937,17744738-17745111
          Length = 534

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
 Frame = +2

Query: 29  PLPYRARPREAGNSTHTKRNTFGLKV*IPGH---KIQKKKRNVYYYTA 163
           P   + RP  AG+S   +R+  G+ + IPG    +IQ + RN+  Y +
Sbjct: 103 PSSRQIRPTMAGSSRVGRRSAAGMPIKIPGDSKIEIQNRSRNLTVYAS 150


>02_02_0093 + 6692957-6693536,6693671-6694077,6694198-6694785
          Length = 524

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +2

Query: 584 EAWQPVYGMVWTRVWESLLLHRDEVVLSHFKSIISSPLSIV 706
           + WQ  +G  W+RV +    +    +LS  + I SSP S+V
Sbjct: 480 DGWQRHFGAKWSRVADLKAKYDPHRILSPGQRIFSSPASMV 520


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,799,739
Number of Sequences: 37544
Number of extensions: 453659
Number of successful extensions: 976
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 954
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 975
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)