Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20309
         (727 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39061| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_12182| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_11871| Best HMM Match : zf-C2H2 (HMM E-Value=1.3e-13)               29   3.8  

>SB_39061| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2362

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = +2

Query: 320  AVINLRIRKKFYLQTIEKARLISDNYRAL 406
            A+IN  +R  FYL  ++KA +++D+Y  +
Sbjct: 1474 AIINKLLRVLFYLMPLDKASVVADDYEVM 1502


>SB_12182| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1361

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +2

Query: 611 VWTRVWESLLLHRDEVVLSHFKSIISSPLSIVKL 712
           VW  V ES+LLH +      +  +IS+P+ ++K+
Sbjct: 37  VWRDVRESMLLHENLRSSPEYYDVISTPIDLLKI 70


>SB_11871| Best HMM Match : zf-C2H2 (HMM E-Value=1.3e-13)
          Length = 774

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 15/33 (45%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
 Frame = -2

Query: 651 SRCNSNDS--HTRVHTIPYTGCHASVCRLSTCG 559
           SR NSN S  H + H   Y GC       STCG
Sbjct: 662 SRINSNPSPTHPKYHNCHYPGCGKQTILGSTCG 694


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,603,607
Number of Sequences: 59808
Number of extensions: 543514
Number of successful extensions: 1326
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1322
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1937927537
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)