Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20309
         (727 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY060306-1|AAL25345.1|   82|Drosophila melanogaster GH15083p pro...    31   1.2  
BT022935-1|AAY55351.1|  283|Drosophila melanogaster IP11234p pro...    29   8.5  
BT022260-1|AAY54676.1|  283|Drosophila melanogaster IP11434p pro...    29   8.5  
AE014297-3835|AAF56493.1|  297|Drosophila melanogaster CG4743-PA...    29   8.5  

>AY060306-1|AAL25345.1|   82|Drosophila melanogaster GH15083p
           protein.
          Length = 82

 Score = 31.5 bits (68), Expect = 1.2
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = -2

Query: 681 IDLKCDRTTSSR-CNSNDSHTRVHTIPYTGCHAS-VCRLSTCG 559
           I+LK  RT  S+ C    +HTR+H   Y   + S VC +  CG
Sbjct: 36  IELKTRRTLISQLCTRTHTHTRLHVHAYVCANPSRVCAVRACG 78


>BT022935-1|AAY55351.1|  283|Drosophila melanogaster IP11234p
           protein.
          Length = 283

 Score = 28.7 bits (61), Expect = 8.5
 Identities = 12/17 (70%), Positives = 13/17 (76%)
 Frame = -3

Query: 140 AFFFGFYGLVSRPLGQT 90
           AFFFGFY L +R LG T
Sbjct: 263 AFFFGFYDLTTRILGAT 279


>BT022260-1|AAY54676.1|  283|Drosophila melanogaster IP11434p
           protein.
          Length = 283

 Score = 28.7 bits (61), Expect = 8.5
 Identities = 12/17 (70%), Positives = 13/17 (76%)
 Frame = -3

Query: 140 AFFFGFYGLVSRPLGQT 90
           AFFFGFY L +R LG T
Sbjct: 263 AFFFGFYDLTTRILGAT 279


>AE014297-3835|AAF56493.1|  297|Drosophila melanogaster CG4743-PA
           protein.
          Length = 297

 Score = 28.7 bits (61), Expect = 8.5
 Identities = 12/17 (70%), Positives = 13/17 (76%)
 Frame = -3

Query: 140 AFFFGFYGLVSRPLGQT 90
           AFFFGFY L +R LG T
Sbjct: 277 AFFFGFYDLTTRILGAT 293


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,654,447
Number of Sequences: 53049
Number of extensions: 764324
Number of successful extensions: 1530
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1476
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1530
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3252477558
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)