Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20309
         (727 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   6.8  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   6.8  
AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    21   9.0  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    21   9.0  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 12/41 (29%), Positives = 17/41 (41%)
 Frame = +3

Query: 24  YRLSHTAPGPARLATLLIRNETRLA*RSRYQAIKSKKKSET 146
           Y+     PG  R + LL  N      R  YQ I  + + +T
Sbjct: 368 YKDGRQLPGTGRQSELLRLNGINREDRGMYQCIVRRSEGDT 408


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 12/41 (29%), Positives = 17/41 (41%)
 Frame = +3

Query: 24  YRLSHTAPGPARLATLLIRNETRLA*RSRYQAIKSKKKSET 146
           Y+     PG  R + LL  N      R  YQ I  + + +T
Sbjct: 368 YKDGRQLPGTGRQSELLRLNGINREDRGMYQCIVRRSEGDT 408


>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -2

Query: 72  VELPASRGRARYGRGDIAN 16
           V +P  +G   Y RG++AN
Sbjct: 61  VRIPKEQGFLSYWRGNLAN 79


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -2

Query: 72  VELPASRGRARYGRGDIAN 16
           V +P  +G   Y RG++AN
Sbjct: 61  VRIPKEQGFLSYWRGNLAN 79


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 228,800
Number of Sequences: 438
Number of extensions: 5514
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22535775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)