Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20302
         (444 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16A11.01 ||SPCC63.15|conserved fungal protein|Schizosaccharo...    28   0.74 
SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces ...    26   3.0  
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||...    25   4.0  
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    25   4.0  
SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharo...    25   6.9  
SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr...    25   6.9  
SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase Met9|...    24   9.1  

>SPCC16A11.01 ||SPCC63.15|conserved fungal
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 328

 Score = 27.9 bits (59), Expect = 0.74
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +1

Query: 37  YSRQPEPRISE-PELKSSRPFLENFKFSQTTYNT 135
           Y+   EP +S  PE +  RP + N   SQTT  T
Sbjct: 290 YASATEPGVSNIPETRPERPVVYNMDVSQTTTTT 323


>SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 444

 Score = 25.8 bits (54), Expect = 3.0
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +1

Query: 232 VWIFEYRTIYIKPPEQAMVXVYDET 306
           VW+ E   + +KPP +    V+D T
Sbjct: 218 VWVMETARLILKPPIETATVVFDMT 242


>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1315

 Score = 25.4 bits (53), Expect = 4.0
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +1

Query: 58  RISEPELKSSRPFLENFKFSQTTY 129
           R++ PE   + PF+ENF++    Y
Sbjct: 241 RVAAPEGTENDPFIENFRYVNYRY 264


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2493

 Score = 25.4 bits (53), Expect = 4.0
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 39  LPTTRAPHIRTRAEVQQTISRKF*ILTNYL 128
           LPT R+  +R   E+ +  SR   +L NYL
Sbjct: 773 LPTFRSQALRVLNELPEIASRNINVLDNYL 802


>SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharomyc
           es pombe|chr 2|||Manual
          Length = 372

 Score = 24.6 bits (51), Expect = 6.9
 Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
 Frame = -1

Query: 324 PEVIDLCFIIHXNHSLLGW----FYVNGSVLEDPYFSLTIISPS 205
           P+ + LC +I  +  LLGW     Y +   ++   ++LT ++PS
Sbjct: 11  PKRLGLCLLITLSIILLGWQCVLLYNHSPEIQRSVYTLTGLAPS 54


>SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 24.6 bits (51), Expect = 6.9
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +1

Query: 229 KVWIFEYRTIYIKPPEQAMVXVYDETKINYF 321
           KVW F +R +    P  A    + ETK+N+F
Sbjct: 327 KVW-FTFRLVLKTKPLYASESEFYETKLNFF 356


>SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase
           Met9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 603

 Score = 24.2 bits (50), Expect = 9.1
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = -1

Query: 288 NHSLLGWFYVNGSVLEDPYFSLTIISPSG*EDIVNNLNQNFK 163
           +H + GW   NG V + PY     + PS    ++N L +  K
Sbjct: 444 SHPVFGWGPPNGYVFQKPYVEF-FVHPS----LLNELKETVK 480


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,841,693
Number of Sequences: 5004
Number of extensions: 36325
Number of successful extensions: 58
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 162176800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)