Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20302
         (444 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0212 + 12697854-12698549,12698655-12698930,12698991-126990...    29   1.7  
04_04_1263 - 32207636-32207938,32208020-32208170,32208263-322085...    28   3.9  
03_02_0147 - 5923117-5923215,5923882-5924069,5924885-5924977,592...    28   3.9  

>04_03_0212 +
           12697854-12698549,12698655-12698930,12698991-12699038,
           12699659-12699715,12700965-12701163,12702267-12702373,
           12702586-12702759,12702844-12703083,12703638-12703693,
           12704499-12704622
          Length = 658

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = +1

Query: 340 VFLPKGYPDRAXRDXSAYQIWDTDXAFCSTITG 438
           + LP GYPD    D   Y +W       S I+G
Sbjct: 195 LLLPDGYPDSVSSDYLQYSLWRGVQGIASQISG 227


>04_04_1263 -
           32207636-32207938,32208020-32208170,32208263-32208500,
           32208604-32208814,32208927-32209108,32209196-32209297,
           32210002-32211187,32212103-32212499,32212551-32212582,
           32212885-32213157,32213307-32213394,32213486-32213723,
           32213824-32214034,32214119-32214300,32214378-32214479,
           32214801-32216224,32216751-32216822,32217688-32217719,
           32218186-32218263,32218425-32218512,32218608-32218845,
           32219060-32219162,32219386-32219558,32219644-32219745,
           32219825-32220606,32220659-32221012,32224055-32224140,
           32224250-32224400,32224534-32224771,32224876-32225119,
           32225190-32225368,32225577-32225675,32225835-32227083
          Length = 3195

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +3

Query: 366 QGXQRXLSLPDMGYRXSFLQHHNRS 440
           +G  R +SLPDM     FLQ  NRS
Sbjct: 330 EGGHRFVSLPDMKVPDKFLQIRNRS 354


>03_02_0147 -
           5923117-5923215,5923882-5924069,5924885-5924977,
           5925499-5925628,5925720-5925802,5925893-5925976,
           5926253-5926316,5926375-5926515,5926801-5926863,
           5926968-5927006,5927126-5927185,5927567-5927624,
           5927708-5928099
          Length = 497

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +1

Query: 343 FLPKGYPDRAXRDXSAYQIWDT 408
           F+P+G+P     D   +Q+WDT
Sbjct: 147 FVPEGFPGSVTPDYVPFQMWDT 168


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,253,108
Number of Sequences: 37544
Number of extensions: 205475
Number of successful extensions: 345
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 339
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 344
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 847740284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)