Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20302
         (444 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51057| Best HMM Match : Neur_chan_memb (HMM E-Value=0.0048)         29   2.3  
SB_42188| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.3  
SB_12356| Best HMM Match : zf-CCHC (HMM E-Value=0.018)                 27   5.3  

>SB_51057| Best HMM Match : Neur_chan_memb (HMM E-Value=0.0048)
          Length = 281

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 11/21 (52%), Positives = 14/21 (66%), Gaps = 2/21 (9%)
 Frame = -3

Query: 301 HHTPQP*--LARVVLCKWFGT 245
           HH P+P     R+V+CKWF T
Sbjct: 19  HHAPEPLPGWVRLVICKWFAT 39


>SB_42188| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 166

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +1

Query: 70  PELKSSRPFLENFKFSQTTYNTYCIQ 147
           PELK +    EN K  +  +N YCIQ
Sbjct: 7   PELKLAGNISENLKNIELRFNDYCIQ 32


>SB_12356| Best HMM Match : zf-CCHC (HMM E-Value=0.018)
          Length = 404

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +1

Query: 70  PELKSSRPFLENFKFSQTTYNTYCIQ 147
           PELK +    EN K  +  +N YCIQ
Sbjct: 7   PELKLAGNISENLKNIELRFNDYCIQ 32


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,275,203
Number of Sequences: 59808
Number of extensions: 249713
Number of successful extensions: 610
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 610
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 871599479
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)