Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20302
(444 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC009308-1|AAH09308.1| 468|Homo sapiens C16orf58 protein protein. 42 0.001
AK222913-1|BAD96633.1| 468|Homo sapiens hypothetical protein FL... 42 0.001
AK023930-1|BAB14730.1| 468|Homo sapiens protein ( Homo sapiens ... 42 0.001
AL049563-3|CAI43017.1| 973|Homo sapiens transient receptor pote... 29 9.6
AF054568-1|AAF00002.1| 973|Homo sapiens transient receptor pote... 29 9.6
AB209258-1|BAD92495.1| 725|Homo sapiens transient receptor pote... 29 9.6
>BC009308-1|AAH09308.1| 468|Homo sapiens C16orf58 protein protein.
Length = 468
Score = 41.9 bits (94), Expect = 0.001
Identities = 16/33 (48%), Positives = 23/33 (69%)
Frame = +1
Query: 340 VFLPKGYPDRAXRDXSAYQIWDTDXAFCSTITG 438
VFLP+G+PD D YQ+WD+ AF S+++G
Sbjct: 76 VFLPQGFPDSVSPDYLPYQLWDSVQAFASSLSG 108
>AK222913-1|BAD96633.1| 468|Homo sapiens hypothetical protein
FLJ13868 variant protein.
Length = 468
Score = 41.9 bits (94), Expect = 0.001
Identities = 16/33 (48%), Positives = 23/33 (69%)
Frame = +1
Query: 340 VFLPKGYPDRAXRDXSAYQIWDTDXAFCSTITG 438
VFLP+G+PD D YQ+WD+ AF S+++G
Sbjct: 76 VFLPQGFPDSVSPDYLPYQLWDSVQAFASSLSG 108
>AK023930-1|BAB14730.1| 468|Homo sapiens protein ( Homo sapiens
cDNA FLJ13868 fis, clone THYRO1001271. ).
Length = 468
Score = 41.9 bits (94), Expect = 0.001
Identities = 16/33 (48%), Positives = 23/33 (69%)
Frame = +1
Query: 340 VFLPKGYPDRAXRDXSAYQIWDTDXAFCSTITG 438
VFLP+G+PD D YQ+WD+ AF S+++G
Sbjct: 76 VFLPQGFPDSVSPDYLPYQLWDSVQAFASSLSG 108
>AL049563-3|CAI43017.1| 973|Homo sapiens transient receptor
potential cation channel, subfamily C, member 5 protein.
Length = 973
Score = 28.7 bits (61), Expect = 9.6
Identities = 15/54 (27%), Positives = 23/54 (42%)
Frame = +1
Query: 217 YSQRKVWIFEYRTIYIKPPEQAMVXVYDETKINYFRNWFTNVFLPKGYPDRAXR 378
+++ K+W+ + PP ++ Y NWF N F PK PD R
Sbjct: 641 FARTKLWMSYFDEGGTLPPPFNIIP--SPKSFLYLGNWFNNTFCPKRDPDGRRR 692
>AF054568-1|AAF00002.1| 973|Homo sapiens transient receptor
potential calcium channel 5 protein.
Length = 973
Score = 28.7 bits (61), Expect = 9.6
Identities = 15/54 (27%), Positives = 23/54 (42%)
Frame = +1
Query: 217 YSQRKVWIFEYRTIYIKPPEQAMVXVYDETKINYFRNWFTNVFLPKGYPDRAXR 378
+++ K+W+ + PP ++ Y NWF N F PK PD R
Sbjct: 641 FARTKLWMSYFDEGGTLPPPFNIIP--SPKSFLYLGNWFNNTFCPKRDPDGRRR 692
>AB209258-1|BAD92495.1| 725|Homo sapiens transient receptor
potential cation channel, subfamily C, member 5 variant
protein.
Length = 725
Score = 28.7 bits (61), Expect = 9.6
Identities = 15/54 (27%), Positives = 23/54 (42%)
Frame = +1
Query: 217 YSQRKVWIFEYRTIYIKPPEQAMVXVYDETKINYFRNWFTNVFLPKGYPDRAXR 378
+++ K+W+ + PP ++ Y NWF N F PK PD R
Sbjct: 642 FARTKLWMSYFDEGGTLPPPFNIIP--SPKSFLYLGNWFNNTFCPKRDPDGRRR 693
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 63,044,457
Number of Sequences: 237096
Number of extensions: 1199905
Number of successful extensions: 1631
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1631
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3659526016
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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