Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20302
         (444 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92806-1|CAB07258.1|  802|Caenorhabditis elegans Hypothetical pr...    30   0.87 
Z81466-6|CAB03870.1|  545|Caenorhabditis elegans Hypothetical pr...    30   0.87 
Z75536-5|CAA99833.1|  545|Caenorhabditis elegans Hypothetical pr...    30   0.87 
U23524-6|AAC46820.1|  383|Caenorhabditis elegans Hypothetical pr...    29   2.0  

>Z92806-1|CAB07258.1|  802|Caenorhabditis elegans Hypothetical
           protein K10G4.1 protein.
          Length = 802

 Score = 29.9 bits (64), Expect = 0.87
 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
 Frame = -1

Query: 300 IIHXNHSLLGW---FYVNGSVLEDPYFSLTIISPSG*EDIVN 184
           +I    SLL W     + G VLE P+F  T+I P   E +VN
Sbjct: 254 LIELAASLLSWCDLIDLKGIVLETPFFKGTVIEPEACEFLVN 295


>Z81466-6|CAB03870.1|  545|Caenorhabditis elegans Hypothetical
           protein F18C12.3 protein.
          Length = 545

 Score = 29.9 bits (64), Expect = 0.87
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = +2

Query: 179 KLFTMSSQPEGEIIVKEKYGSSSTEPFT*NHPSKLWLXCMMKQRSITS 322
           K F   +Q + E +V++K GSS +      HPS  W+   +K++ + S
Sbjct: 484 KRFQKGTQKKSEAVVEKKKGSSKSAVSGEMHPS--WIASQLKKKELAS 529


>Z75536-5|CAA99833.1|  545|Caenorhabditis elegans Hypothetical
           protein F18C12.3 protein.
          Length = 545

 Score = 29.9 bits (64), Expect = 0.87
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = +2

Query: 179 KLFTMSSQPEGEIIVKEKYGSSSTEPFT*NHPSKLWLXCMMKQRSITS 322
           K F   +Q + E +V++K GSS +      HPS  W+   +K++ + S
Sbjct: 484 KRFQKGTQKKSEAVVEKKKGSSKSAVSGEMHPS--WIASQLKKKELAS 529


>U23524-6|AAC46820.1|  383|Caenorhabditis elegans Hypothetical
           protein C29F5.1 protein.
          Length = 383

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -1

Query: 303 FIIHXNHSLLGWFYVNGSVLEDPYFSLTIIS 211
           F  + NH LLGWF  NG   +   ++L  +S
Sbjct: 275 FFTNANHELLGWFKGNGDFGKPAIYTLQDVS 305


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,001,097
Number of Sequences: 27780
Number of extensions: 196083
Number of successful extensions: 369
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 367
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 369
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 767282256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)