Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20302
         (444 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g45890.1 68416.m04966 expressed protein contains Pfam domain,...    31   0.46 
At1g13770.1 68414.m01616 expressed protein contains Pfam domain,...    29   1.4  
At5g09460.1 68418.m01095 expressed protein                             26   10.0 

>At3g45890.1 68416.m04966 expressed protein contains Pfam domain,
           PF04884: Protein of unknown function, DUF647
          Length = 608

 Score = 30.7 bits (66), Expect = 0.46
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = +1

Query: 322 RNWFTNVFLPKGYPDRAXRDXSAYQIWDTDXAFCSTITG 438
           RN  T   LP+G+P+    D   Y +W       S I+G
Sbjct: 191 RNLLTQFLLPEGFPNSVTSDYLDYSLWRGVQGIASQISG 229


>At1g13770.1 68414.m01616 expressed protein contains Pfam domain,
           PF04884: Protein of unknown function, DUF647; contains
           non-consensus (GC) splice site at intron 2
          Length = 440

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = +1

Query: 307 KINYFRNWFTNVFLPKGYPDRAXRDXSAYQIWDT 408
           + N+        F+P+G+P     D   +Q+WDT
Sbjct: 45  RFNHVWRRVLQAFVPEGFPGSVTPDYVGFQLWDT 78


>At5g09460.1 68418.m01095 expressed protein 
          Length = 326

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +1

Query: 229 KVWIFEYRTIYIKPPEQAMVXVYDE 303
           KV+  E++  Y++PP QA++  YD+
Sbjct: 40  KVYAAEHQFRYLQPPFQALLSRYDQ 64


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,343,684
Number of Sequences: 28952
Number of extensions: 178343
Number of successful extensions: 297
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 294
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 297
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 712739520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)