Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20300
(689 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81119-8|CAB03340.1| 504|Caenorhabditis elegans Hypothetical pr... 31 1.0
Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr... 29 2.4
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re... 29 2.4
AF022980-10|AAG24193.1| 350|Caenorhabditis elegans Serpentine r... 29 2.4
Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical pr... 29 3.1
Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical pr... 29 3.1
AL033536-1|CAA22138.1| 908|Caenorhabditis elegans Hypothetical ... 28 7.2
Z68338-9|CAA92762.2| 2923|Caenorhabditis elegans Hypothetical pr... 27 9.6
Z68338-8|CAA92761.2| 2920|Caenorhabditis elegans Hypothetical pr... 27 9.6
Z54218-6|CAA90960.2| 2923|Caenorhabditis elegans Hypothetical pr... 27 9.6
Z54218-5|CAA90959.2| 2920|Caenorhabditis elegans Hypothetical pr... 27 9.6
>Z81119-8|CAB03340.1| 504|Caenorhabditis elegans Hypothetical
protein T10H4.10 protein.
Length = 504
Score = 30.7 bits (66), Expect = 1.0
Identities = 18/52 (34%), Positives = 24/52 (46%)
Frame = +2
Query: 113 DTRENRLTFRTGSGPAFSGLPRIFLAVRSCRFRFVRDRHDSVRPPFNVSSEL 268
D +L R G +G IF VR RF++ R D++ PFN EL
Sbjct: 200 DPEFEKLVSRLAKGFENTGFLDIFCPVRILESRFLKWRQDTIFEPFNYILEL 251
>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical
protein F29D11.1 protein.
Length = 4753
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/44 (29%), Positives = 19/44 (43%)
Frame = +3
Query: 267 WHGQGESDCLIKTKHCDGPRGC*RNVISAQCSECQREEIQASAG 398
W+ G C+ + K CDG + C QCS+ + AG
Sbjct: 267 WNCPGTGHCIDQLKLCDGSKDCADGADEQQCSQNLCPSLGCQAG 310
>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL
receptor-related protein protein.
Length = 4753
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/44 (29%), Positives = 19/44 (43%)
Frame = +3
Query: 267 WHGQGESDCLIKTKHCDGPRGC*RNVISAQCSECQREEIQASAG 398
W+ G C+ + K CDG + C QCS+ + AG
Sbjct: 267 WNCPGTGHCIDQLKLCDGSKDCADGADEQQCSQNLCPSLGCQAG 310
>AF022980-10|AAG24193.1| 350|Caenorhabditis elegans Serpentine
receptor, class j protein44 protein.
Length = 350
Score = 29.5 bits (63), Expect = 2.4
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +1
Query: 640 SSLKNHYFHWFITYSV 687
SSL H+FHWF+T SV
Sbjct: 123 SSLTRHHFHWFMTGSV 138
>Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical protein
F54B3.1b protein.
Length = 3394
Score = 29.1 bits (62), Expect = 3.1
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = -1
Query: 650 FSDDRAKRSPTYATPLMSPYNARLESSSTGSSFPADSPKP 531
F DD K ++ S + ESSSTGSS +D P+P
Sbjct: 1429 FLDDEEKTITDNSSSASSEDSDSDESSSTGSSSSSDDPRP 1468
>Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical protein
F54B3.1a protein.
Length = 3396
Score = 29.1 bits (62), Expect = 3.1
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = -1
Query: 650 FSDDRAKRSPTYATPLMSPYNARLESSSTGSSFPADSPKP 531
F DD K ++ S + ESSSTGSS +D P+P
Sbjct: 1429 FLDDEEKTITDNSSSASSEDSDSDESSSTGSSSSSDDPRP 1468
>AL033536-1|CAA22138.1| 908|Caenorhabditis elegans Hypothetical
protein Y53C10A.4 protein.
Length = 908
Score = 27.9 bits (59), Expect = 7.2
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
Frame = -1
Query: 647 SDDRAKRSPTYATP----LMSPYNARLESSSTGSSFPAD-SPKP 531
+DD R P + + L PY + SSS+ SS P+D +P+P
Sbjct: 681 NDDSDSRFPAFKSSSVAMLTEPYKSSSSSSSSTSSIPSDPAPRP 724
>Z68338-9|CAA92762.2| 2923|Caenorhabditis elegans Hypothetical protein
T24B8.7b protein.
Length = 2923
Score = 27.5 bits (58), Expect = 9.6
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -1
Query: 578 ESSSTGSSFPADSPKPVPLAVVSQIVDRDS 489
E S T F D +P P+A+VSQ+V S
Sbjct: 2428 EDSETEEMFRQDMMRPSPMALVSQLVMNQS 2457
>Z68338-8|CAA92761.2| 2920|Caenorhabditis elegans Hypothetical protein
T24B8.7a protein.
Length = 2920
Score = 27.5 bits (58), Expect = 9.6
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -1
Query: 578 ESSSTGSSFPADSPKPVPLAVVSQIVDRDS 489
E S T F D +P P+A+VSQ+V S
Sbjct: 2425 EDSETEEMFRQDMMRPSPMALVSQLVMNQS 2454
>Z54218-6|CAA90960.2| 2923|Caenorhabditis elegans Hypothetical protein
T24B8.7b protein.
Length = 2923
Score = 27.5 bits (58), Expect = 9.6
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -1
Query: 578 ESSSTGSSFPADSPKPVPLAVVSQIVDRDS 489
E S T F D +P P+A+VSQ+V S
Sbjct: 2428 EDSETEEMFRQDMMRPSPMALVSQLVMNQS 2457
>Z54218-5|CAA90959.2| 2920|Caenorhabditis elegans Hypothetical protein
T24B8.7a protein.
Length = 2920
Score = 27.5 bits (58), Expect = 9.6
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -1
Query: 578 ESSSTGSSFPADSPKPVPLAVVSQIVDRDS 489
E S T F D +P P+A+VSQ+V S
Sbjct: 2425 EDSETEEMFRQDMMRPSPMALVSQLVMNQS 2454
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,974,002
Number of Sequences: 27780
Number of extensions: 330469
Number of successful extensions: 970
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 911
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 969
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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