Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20300
         (689 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      25   0.90 
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   3.6  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   3.6  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   3.6  
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          22   4.8  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          22   4.8  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          22   4.8  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          22   4.8  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          22   4.8  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          22   4.8  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    22   4.8  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                22   6.3  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    21   8.4  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          21   8.4  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   8.4  

>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 24.6 bits (51), Expect = 0.90
 Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
 Frame = -2

Query: 256 DVERRSYRIVPIAHETKP---TRPYG*EDPRKAGERGSGSS 143
           DVE + Y+ V I+  T+P   T+ Y  E PR  G+R   SS
Sbjct: 182 DVEEQRYKQVEISQMTEPSSSTKSYVLEGPRN-GKRKRKSS 221


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +1

Query: 4   KRMRPVPGLVDVRALCSF*RVSILI*CGLKNCI 102
           K +RPV    DV  +C   ++S LI   LKN I
Sbjct: 42  KLVRPVVNTSDVLRVCIKLKLSQLIDVNLKNQI 74


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +1

Query: 4   KRMRPVPGLVDVRALCSF*RVSILI*CGLKNCI 102
           K +RPV    DV  +C   ++S LI   LKN I
Sbjct: 42  KLVRPVVNTSDVLRVCIKLKLSQLIDVNLKNQI 74


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = -3

Query: 264 SELTLNGGRTESCRSRTKRNRHDLTARKIRGRPENAGPDPVRNV 133
           + LTL+G    S      RN  DL    + G    + PD +R++
Sbjct: 410 NRLTLSGNAIASIDPLAFRNCSDLKELDLSGNELTSVPDALRDL 453


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -3

Query: 240 RTESCRSRTKRNRHD 196
           RT SC SR + +RH+
Sbjct: 226 RTSSCHSRYEDSRHE 240


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -3

Query: 240 RTESCRSRTKRNRHD 196
           RT SC SR + +RH+
Sbjct: 226 RTSSCHSRYEDSRHE 240


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -3

Query: 240 RTESCRSRTKRNRHD 196
           RT SC SR + +RH+
Sbjct: 226 RTSSCHSRYEDSRHE 240


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -3

Query: 240 RTESCRSRTKRNRHD 196
           RT SC SR + +RH+
Sbjct: 226 RTSSCHSRYEDSRHE 240


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -3

Query: 240 RTESCRSRTKRNRHD 196
           RT SC SR + +RH+
Sbjct: 226 RTSSCHSRYEDSRHE 240


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -3

Query: 240 RTESCRSRTKRNRHD 196
           RT SC SR + +RH+
Sbjct: 226 RTSSCHSRYEDSRHE 240


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -3

Query: 240 RTESCRSRTKRNRHD 196
           RT SC SR + +RH+
Sbjct: 226 RTSSCHSRYEDSRHE 240


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -1

Query: 647 SDDRAKRSPTYATPLMSPYNARLESSSTGSSFPADSP 537
           +D R   SP   TP+ + Y   +E+ +  S F  D+P
Sbjct: 21  NDKRIYLSPR--TPIKNVYKNNIETKNQLSPFNIDTP 55


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +2

Query: 218 RDRHDSVRPPFNVSSELARTRGIRLSN 298
           R+    +RPP  V S   RTR  R +N
Sbjct: 119 RNSRYPLRPPQEVISHYRRTRRDRYTN 145


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = +1

Query: 487 PLSLSTICETTAKGTGL 537
           PLSL    ETT  GT L
Sbjct: 447 PLSLKNKVETTHSGTSL 463


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -1

Query: 614 ATPLMSPYNARLESSSTGSSFP 549
           A  + SP   +   SSTGSS P
Sbjct: 347 AKQMASPEPPKSSESSTGSSIP 368


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,184
Number of Sequences: 438
Number of extensions: 4631
Number of successful extensions: 20
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21073995
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)