Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20298
         (560 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8IBJ6 Cluster: Putative uncharacterized protein MAL7P1...    34   2.0  
UniRef50_Q22WA5 Cluster: LMBR1-like conserved region family prot...    33   3.4  
UniRef50_A4VE69 Cluster: Putative uncharacterized protein; n=1; ...    33   3.4  
UniRef50_Q02931 Cluster: NET1-associated nuclear protein 1; n=4;...    33   3.4  
UniRef50_Q4N697 Cluster: Prolyl-tRNA synthetase, putative; n=2; ...    33   4.6  
UniRef50_Q4UBM2 Cluster: Cleavage and polyadenylation specificty...    33   6.0  
UniRef50_Q3K166 Cluster: Putative uncharacterized protein; n=7; ...    32   8.0  

>UniRef50_Q8IBJ6 Cluster: Putative uncharacterized protein
           MAL7P1.142; n=1; Plasmodium falciparum 3D7|Rep: Putative
           uncharacterized protein MAL7P1.142 - Plasmodium
           falciparum (isolate 3D7)
          Length = 418

 Score = 34.3 bits (75), Expect = 2.0
 Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
 Frame = -1

Query: 365 IANNSTISYLYFP*TFSTMK*FVYTLIYFTIFNYFNISFMIRHRFNISNIEYILLLNVFL 186
           I  +ST+S+ YF   F +   F+Y L++F  F YF + F+    F +  I +   L  F+
Sbjct: 5   IIMHSTVSFFYFIVHFIS---FLYFLVHFISFLYFLVHFISFFYFLVHFISFFYFLVHFI 61

Query: 185 S-AAIMIH*FKYTNIYSLYEILSL 117
           S    ++H   +  ++  Y  + L
Sbjct: 62  SFFYFLVHFISFFYVHHSYYFILL 85


>UniRef50_Q22WA5 Cluster: LMBR1-like conserved region family
           protein; n=1; Tetrahymena thermophila SB210|Rep:
           LMBR1-like conserved region family protein - Tetrahymena
           thermophila SB210
          Length = 612

 Score = 33.5 bits (73), Expect = 3.4
 Identities = 13/31 (41%), Positives = 21/31 (67%)
 Frame = -1

Query: 302 FVYTLIYFTIFNYFNISFMIRHRFNISNIEY 210
           F   LI FT+FN+F+I  +I  +FN+  +E+
Sbjct: 487 FPVVLIIFTLFNFFDIYDLIVEKFNLQQLEF 517


>UniRef50_A4VE69 Cluster: Putative uncharacterized protein; n=1;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 544

 Score = 33.5 bits (73), Expect = 3.4
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = -1

Query: 299 VYTLIYFTIFNYFNISFMIRHRFNISNI-EYILLLNVFLSAAIMI 168
           +Y  IYF ++NYFN+ F    +  I N  ++I  L+ F     +I
Sbjct: 133 IYLFIYFQLYNYFNLIFQFLFQLLIINFQDFIFFLHYFFLILTLI 177


>UniRef50_Q02931 Cluster: NET1-associated nuclear protein 1; n=4;
           Saccharomycetales|Rep: NET1-associated nuclear protein 1
           - Saccharomyces cerevisiae (Baker's yeast)
          Length = 896

 Score = 33.5 bits (73), Expect = 3.4
 Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
 Frame = +1

Query: 328 GKYKYDIVLLFAINRCNK--QFLVSNESDIFDTIIRSYPWIVLTSVIANCMQPIQAAFLK 501
           G Y Y ++L    N  N   QFL+ N SD+   +  + P  V  S I +  QPI A   K
Sbjct: 351 GNY-YSLILQMTENNSNSDYQFLLLNASDLTSKLSINGPLPVFNSTIKHIQQPISAMNTK 409

Query: 502 N 504
           N
Sbjct: 410 N 410


>UniRef50_Q4N697 Cluster: Prolyl-tRNA synthetase, putative; n=2;
           Theileria|Rep: Prolyl-tRNA synthetase, putative -
           Theileria parva
          Length = 461

 Score = 33.1 bits (72), Expect = 4.6
 Identities = 23/68 (33%), Positives = 35/68 (51%)
 Frame = -1

Query: 212 YILLLNVFLSAAIMIH*FKYTNIYSLYEILSL*QHVYSTYSISHIIETNNYLLMIPNRQL 33
           Y +LL  F    I IH +KY N+Y+ +       +V  T + S   + N+ LL I NR+ 
Sbjct: 4   YSVLLYYFY--IIHIHCYKYVNLYTHFN-----NYVNGTNNFSLKSQANSELLGILNRRS 56

Query: 32  GTLSTSPV 9
            T +T P+
Sbjct: 57  NTFNTKPI 64


>UniRef50_Q4UBM2 Cluster: Cleavage and polyadenylation specificty
            factor, subunit, putative; n=4; Piroplasmida|Rep:
            Cleavage and polyadenylation specificty factor, subunit,
            putative - Theileria annulata
          Length = 1282

 Score = 32.7 bits (71), Expect = 6.0
 Identities = 15/71 (21%), Positives = 38/71 (53%)
 Frame = -1

Query: 287  IYFTIFNYFNISFMIRHRFNISNIEYILLLNVFLSAAIMIH*FKYTNIYSLYEILSL*QH 108
            + F   N +N+   +++ F I  + + + L  F+ +A+ ++ F  +N+  +   LSL   
Sbjct: 1010 VRFENLNSYNLPLEMKYHFQIFTLWFFIYLFSFIISALYLYFFVESNVKKVNYCLSLNYL 1069

Query: 107  VYSTYSISHII 75
            +Y+T+ +  ++
Sbjct: 1070 LYTTFLLLDLV 1080


>UniRef50_Q3K166 Cluster: Putative uncharacterized protein; n=7;
           Streptococcus agalactiae|Rep: Putative uncharacterized
           protein - Streptococcus agalactiae serotype Ia
          Length = 216

 Score = 32.3 bits (70), Expect = 8.0
 Identities = 15/47 (31%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
 Frame = -1

Query: 302 FVYTLIYFTIF-NYFNISFMIRHRFNISNIEYILLLNVFLSAAIMIH 165
           F+Y LI+ TIF N  N++++ R  +  ++I   L+LN+ +   I+++
Sbjct: 85  FLY-LIHITIFPNNINLAYLTRSEYIYNHISLFLILNIIIFIGILLY 130


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 494,630,729
Number of Sequences: 1657284
Number of extensions: 8895079
Number of successful extensions: 18370
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 17797
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18361
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 37488397230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)