Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20298
         (560 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory recept...    21   5.5  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    21   9.6  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    21   9.6  

>AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory receptor
           candidate 48 protein.
          Length = 408

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 24/102 (23%), Positives = 48/102 (47%), Gaps = 11/102 (10%)
 Frame = -1

Query: 350 TISYLYFP*TFSTMK*FVYTLIYFTIFN----YFNISFMIRHRFN-----ISNIEYI-LL 201
           T+ Y+Y+    +++  F YTL  F IF     Y N+  +I   F+     +S  E + L+
Sbjct: 155 TVYYIYYSVHEASIINFGYTLAKFMIFTSTCIYTNLLRIIEADFSKLNHLLSGTENLDLV 214

Query: 200 LNVFLSAAIMIH*FKYTNIYSLYEILSL*QH-VYSTYSISHI 78
           L ++     M    K   +Y    +L++  + +++ Y + H+
Sbjct: 215 LPIYSQLVFMCK--KINKLYGHQLLLTILTYLIWTIYEMYHL 254


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -1

Query: 290 LIYFTIFNYFNISFMIRHRFNISNIE 213
           L + + F Y N + MI    N++NI+
Sbjct: 588 LSFLSWFRYGNGALMINQWENVTNIQ 613


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -1

Query: 290 LIYFTIFNYFNISFMIRHRFNISNIE 213
           L + + F Y N + MI    N++NI+
Sbjct: 588 LSFLSWFRYGNGALMINQWENVTNIQ 613


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,274
Number of Sequences: 336
Number of extensions: 2605
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 13786212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)