Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20298
         (560 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb...    28   1.1  
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    26   3.3  
SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase Ubp22|Sch...    26   3.3  
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po...    25   7.6  

>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1283

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 11/34 (32%), Positives = 22/34 (64%)
 Frame = -1

Query: 107 VYSTYSISHIIETNNYLLMIPNRQLGTLSTSPVN 6
           +YSTY+ +++  +   L ++P+  + TLST  +N
Sbjct: 163 IYSTYTSTYLPNSTIDLSILPHSTISTLSTVSIN 196


>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 796

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -1

Query: 299 VYTLIYFTIFNYFNISFMIRHRFNISNIEYI 207
           ++ L+ FT+ + +N S MIR      ++ YI
Sbjct: 723 IFPLLCFTVISAYNFSTMIRSSMQFVSLYYI 753


>SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase
           Ubp22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1108

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 14/54 (25%), Positives = 23/54 (42%)
 Frame = +1

Query: 352 LLFAINRCNKQFLVSNESDIFDTIIRSYPWIVLTSVIANCMQPIQAAFLKNLER 513
           + +A+ RC       NE      + +S+ W  L S + + +Q        NLER
Sbjct: 255 IAYALQRCFYNLQFMNEPVSTTELTKSFGWDSLDSFMQHDVQEFNRVLQDNLER 308


>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1564

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -1

Query: 482  IGCMQLAITDVNTIHG*LRMIVSNISDSFETKNCL 378
            +  +   I + + I G   + +S I+DSF   NCL
Sbjct: 1365 LNSLHKCIVNSHLIRGLQSLYISYINDSFSVDNCL 1399


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,187,274
Number of Sequences: 5004
Number of extensions: 42153
Number of successful extensions: 97
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)