Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20298
         (560 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19050| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.5  
SB_25939| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.9  

>SB_19050| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 334

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = -1

Query: 293 TLIYFTIFNYFNISFMIRHRFNISNIEYILLLNV--FLSAAIMI 168
           T++   +  +F + + +RHR   SN+ Y LLL V     AAI I
Sbjct: 118 TIVAIALDRFFAVCYPLRHRVTSSNV-YFLLLGVLWLFPAAIAI 160


>SB_25939| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 801

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = +1

Query: 406 DIFDT--IIRSYPWIVLTSVIANCMQPIQAAFLKNLERRKTGIC 531
           D++D    I S+P +   +V A C+Q + A  + N+ + +  +C
Sbjct: 160 DVYDLSLTITSFPSVCYANVSATCLQSLAAEAILNMVQAQGDVC 203


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,157,861
Number of Sequences: 59808
Number of extensions: 270730
Number of successful extensions: 729
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 705
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 729
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1312894764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)