BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20298
(560 letters)
Database: mosquito
2352 sequences; 563,979 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY299455-1|AAQ73620.1| 493|Anopheles gambiae FMRF amide recepto... 25 1.3
AJ301655-1|CAC35008.1| 1433|Anopheles gambiae putative epidermal... 23 9.0
>AY299455-1|AAQ73620.1| 493|Anopheles gambiae FMRF amide receptor
protein.
Length = 493
Score = 25.4 bits (53), Expect = 1.3
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +1
Query: 241 LIINEMLK*LNIVKYINV*TNYFIVENV*GKYKYDIVLLF 360
LII M+K N++ IN N+FI K+K +LLF
Sbjct: 339 LIIEYMVKVSNLLVTINSSVNFFIYVIFGEKFKRIFLLLF 378
>AJ301655-1|CAC35008.1| 1433|Anopheles gambiae putative epidermal
growth factor receptorprotein.
Length = 1433
Score = 22.6 bits (46), Expect = 9.0
Identities = 12/34 (35%), Positives = 15/34 (44%)
Frame = +1
Query: 298 TNYFIVENV*GKYKYDIVLLFAINRCNKQFLVSN 399
TNYF N GKY Y + +C + L N
Sbjct: 243 TNYFWEPNPDGKYAYGAT---CVRKCPEHLLKDN 273
Database: mosquito
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 563,979
Number of sequences in database: 2352
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 549,046
Number of Sequences: 2352
Number of extensions: 10022
Number of successful extensions: 15
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 52563375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -