Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20298
         (560 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58732-6|AAB00596.3|  333|Caenorhabditis elegans Serpentine rece...    31   0.43 
U58732-5|AAW88398.1|  337|Caenorhabditis elegans Serpentine rece...    31   0.43 
AF125459-9|AAD12845.2|  328|Caenorhabditis elegans Serpentine re...    28   5.3  
Z81489-10|CAB04004.2|  337|Caenorhabditis elegans Hypothetical p...    27   7.0  
Z81039-8|CAB02779.2|  225|Caenorhabditis elegans Hypothetical pr...    27   9.2  
U41034-8|AAA82382.1|  669|Caenorhabditis elegans Hypothetical pr...    27   9.2  
U28971-3|AAK68670.1|  319|Caenorhabditis elegans Hypothetical pr...    27   9.2  

>U58732-6|AAB00596.3|  333|Caenorhabditis elegans Serpentine
           receptor, class v protein5, isoform a protein.
          Length = 333

 Score = 31.5 bits (68), Expect = 0.43
 Identities = 15/57 (26%), Positives = 32/57 (56%)
 Frame = -1

Query: 299 VYTLIYFTIFNYFNISFMIRHRFNISNIEYILLLNVFLSAAIMIH*FKYTNIYSLYE 129
           +YT+I FT+  + + + +    F I  ++Y   L  F+  +I +   KY+++Y+ +E
Sbjct: 18  IYTMIVFTLKRHRSNALLGGSFFRIVEMQYYAELFFFVEFSITMRFRKYSSLYAFFE 74


>U58732-5|AAW88398.1|  337|Caenorhabditis elegans Serpentine
           receptor, class v protein5, isoform b protein.
          Length = 337

 Score = 31.5 bits (68), Expect = 0.43
 Identities = 15/57 (26%), Positives = 32/57 (56%)
 Frame = -1

Query: 299 VYTLIYFTIFNYFNISFMIRHRFNISNIEYILLLNVFLSAAIMIH*FKYTNIYSLYE 129
           +YT+I FT+  + + + +    F I  ++Y   L  F+  +I +   KY+++Y+ +E
Sbjct: 18  IYTMIVFTLKRHRSNALLGGSFFRIVEMQYYAELFFFVEFSITMRFRKYSSLYAFFE 74


>AF125459-9|AAD12845.2|  328|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 22 protein.
          Length = 328

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = +1

Query: 430 SYPWIVLTSVIANCMQPIQAAFLKNLERRKTGICELFNXFFFT 558
           S+ ++  +  I +    + AAF   L  R + +C + + FFFT
Sbjct: 66  SFYYLYTSEAIMSIYDSLVAAFFSRLVLRVSPLCTILSPFFFT 108


>Z81489-10|CAB04004.2|  337|Caenorhabditis elegans Hypothetical
           protein C55A1.8 protein.
          Length = 337

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = -1

Query: 293 TLIYFTIFNYFNISFMIRHRFNISNIEYILLLN-VFLSAAIMI 168
           T+I   I   FN+   I   F I N  YIL L  +FL A + I
Sbjct: 255 TMIILLIPMTFNLFVSIGELFQIGNFSYILFLRPLFLDARVHI 297


>Z81039-8|CAB02779.2|  225|Caenorhabditis elegans Hypothetical
           protein C25D7.10 protein.
          Length = 225

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 17/71 (23%), Positives = 36/71 (50%)
 Frame = -1

Query: 290 LIYFTIFNYFNISFMIRHRFNISNIEYILLLNVFLSAAIMIH*FKYTNIYSLYEILSL*Q 111
           L+++T+ NY  ++ +   +  I  I    L ++FL   + I  F Y  + +L  I+S   
Sbjct: 140 LVFYTLQNYLVLTPL---KMLILLIATSSLNSIFLQILLSIFVFPYFEVVTLSTIISFYI 196

Query: 110 HVYSTYSISHI 78
           H  + + ++H+
Sbjct: 197 HFNNAFFMNHL 207


>U41034-8|AAA82382.1|  669|Caenorhabditis elegans Hypothetical
           protein M02D8.5 protein.
          Length = 669

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +1

Query: 379 KQFLVSNESDIFDTIIRSYPWIVLTSVIANCMQPIQAAFLKNLERRKTGICELFNXF 549
           K +LV   S   D    SY W + + +IA  MQP +   L + + RK     L   F
Sbjct: 505 KNYLVLQYSTT-DISSVSYSWAISSGIIARTMQPGETVVLVSDDYRKYNASPLDQQF 560


>U28971-3|AAK68670.1|  319|Caenorhabditis elegans Hypothetical
           protein B0244.7 protein.
          Length = 319

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = -1

Query: 260 NISFMIRHRFNISNIEYILLLNVFLSAAIMIH*FKYTNIYSLYEIL 123
           NIS    H  ++ NIE +L   +F+    M     + NIY  Y ++
Sbjct: 28  NISNFCNHARDVYNIEMLLRWAIFIIPCCMSFFALFLNIYIFYVLI 73


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,772,984
Number of Sequences: 27780
Number of extensions: 227009
Number of successful extensions: 484
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 472
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 484
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1155524042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)