Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20298
         (560 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   3.7  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   3.7  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    22   3.7  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    22   4.9  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    22   4.9  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          21   6.4  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      21   6.4  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 6/20 (30%), Positives = 14/20 (70%)
 Frame = +1

Query: 64  LFVSIICDIEYVLYTCCYSD 123
           LF++I+C + Y++   C ++
Sbjct: 417 LFIAIVCFVSYLIGLFCITE 436


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 6/20 (30%), Positives = 14/20 (70%)
 Frame = +1

Query: 64  LFVSIICDIEYVLYTCCYSD 123
           LF++I+C + Y++   C ++
Sbjct: 470 LFIAIVCFVSYLIGLFCITE 489


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = -3

Query: 129 DFVAITTRI*YVFYITYYRDKQLPANDSEPPVGNAFNIA 13
           DF+    +   V  ++ Y DK +PA+    P  N  +I+
Sbjct: 137 DFIQKNLQCCGVHSLSDYNDKPIPASCCNSPENNTCSIS 175


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 10/36 (27%), Positives = 16/36 (44%)
 Frame = -1

Query: 113 QHVYSTYSISHIIETNNYLLMIPNRQLGTLSTSPVN 6
           QH +   S+ +I   NNY +  P + +      P N
Sbjct: 128 QHEWFQLSLKNIEPYNNYYIWHPGKIVNGKRVPPTN 163


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 10/36 (27%), Positives = 16/36 (44%)
 Frame = -1

Query: 113 QHVYSTYSISHIIETNNYLLMIPNRQLGTLSTSPVN 6
           QH +   S+ +I   NNY +  P + +      P N
Sbjct: 128 QHEWFQLSLKNIEPYNNYYIWHPGKIVNGKRVPPTN 163


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 7/25 (28%), Positives = 14/25 (56%)
 Frame = +1

Query: 172 IMAAERKTFNNKMYSMFDMLNRCLI 246
           ++     + N K Y M+D+L R ++
Sbjct: 367 VIEGNSDSINTKFYGMYDILARDIL 391


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 7/25 (28%), Positives = 14/25 (56%)
 Frame = +1

Query: 172 IMAAERKTFNNKMYSMFDMLNRCLI 246
           ++     + N K Y M+D+L R ++
Sbjct: 367 VIEGSSDSINTKFYGMYDILARDIL 391


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,518
Number of Sequences: 438
Number of extensions: 3295
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16195212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)