Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20297
(534 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 29 0.33
SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr 2... 28 0.76
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c... 28 0.76
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch... 28 1.0
SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit ... 27 1.8
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 27 2.3
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces... 26 3.1
SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce... 25 5.4
SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces pombe... 25 5.4
SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces pombe... 25 5.4
SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces pombe... 25 5.4
SPBC19F8.01c |spn7|SPBC21.08c|septin Spn7|Schizosaccharomyces po... 25 5.4
SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces pombe... 25 5.4
SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyce... 25 5.4
SPBC29A3.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 25 7.1
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 25 9.4
SPAC21E11.07 ||SPAC2C4.01|glycine cleavage T-protein|Schizosacch... 25 9.4
SPBC23E6.08 |sat1||Golgi membrane exchange factor subunit Sat1 |... 25 9.4
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 29.5 bits (63), Expect = 0.33
Identities = 15/51 (29%), Positives = 19/51 (37%)
Frame = +2
Query: 257 HRDSGEEPASGQRRYRSGEGKEQIPERHRELRSH*AEAHGNVREELAPHKG 409
H + GE + GE P +H EL H H E+ HKG
Sbjct: 317 HHEPGEHMPPPPMHHEPGEHMPPPPFKHHELEEHEGPEHHRGPEDKEHHKG 367
>SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 426
Score = 28.3 bits (60), Expect = 0.76
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = -1
Query: 255 VQLARIKLLDTVE*-RLLGLLSGDVFSRRKHNLFIGVDVTETAGVEAFELTLQ 100
VQL KL +T + G ++G +S +LFIGVD G+ F LQ
Sbjct: 367 VQLFDTKLFNTSQVIDFFGEIAGTAYSSSGDSLFIGVDDPMLGGILEFRRPLQ 419
>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 28.3 bits (60), Expect = 0.76
Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 7/64 (10%)
Frame = +1
Query: 79 LPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSA-------EDVATEKTQKSLFDGIEKF 237
L K +TDL +Q E FN C + D + +V A E V E+ + DG+E
Sbjct: 428 LNKWSTDLTTQTEVFNKLCDQVSDWDRTLVDNGALISKLYTETVEAEQMSNRIDDGLEYV 487
Query: 238 DSSQ 249
SSQ
Sbjct: 488 SSSQ 491
>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
Eme1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 27.9 bits (59), Expect = 1.0
Identities = 20/72 (27%), Positives = 35/72 (48%)
Frame = +1
Query: 13 SSSKIY*FRMACSVSDTPSLKDLPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVA 192
S SK+ +A S + ++ D P+ +T S L+ F+T + + + VLPS D
Sbjct: 26 SPSKVCRDNIALSEHNVITVLDTPQRSTQCDSLLKSFSTPLV----SGSEDVLPSPRDAL 81
Query: 193 TEKTQKSLFDGI 228
+KS+ D +
Sbjct: 82 NITNKKSVTDNL 93
>SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit
Bdp1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 507
Score = 27.1 bits (57), Expect = 1.8
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +3
Query: 303 EAEKEKNKFLNGIENFDPTKLKHTETCEKNSLPTKDVIEQEKSA 434
E EKE K ENF+ + + E E+ L +EQEK+A
Sbjct: 445 EMEKELQKIR---ENFEEERRRAIEVAEQRQLIVNHELEQEKNA 485
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 26.6 bits (56), Expect = 2.3
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = -2
Query: 197 SVATSSADGSTIFSLVSTSRRQLVLKPSS*LFRSVATLGRSFRE 66
SV + DG + + +++RQ V+ P + F + +GR F+E
Sbjct: 86 SVVAFTKDGERLVGV--SAKRQAVINPENTFFATKRLIGRRFKE 127
>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1154
Score = 26.2 bits (55), Expect = 3.1
Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Frame = +2
Query: 110 SSKASTPAVSVTSTPMKRLC-FRLLKTSPLR--RPRSLYST-VSRSLIRAS*THRDSGEE 277
S++ STP V + + + F L ++P+R R R +S +SRS+ + S +R + EE
Sbjct: 325 STEPSTPNVQKSPNRLPPVGNFSLPPSAPVREKRNRPAHSAQISRSISKTSRMYRQTAEE 384
Query: 278 P 280
P
Sbjct: 385 P 385
>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 25.4 bits (53), Expect = 5.4
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +3
Query: 312 KEKNKFLNGIENFDPTKLKHTETCEKN 392
K + K L G ++ DP L+ + CE+N
Sbjct: 307 KMQEKELEGSDSIDPILLEKIDVCEEN 333
>SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.4 bits (53), Expect = 5.4
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -2
Query: 206 WVFSVATSSADGSTIFSLVSTSRRQL 129
W+FSVA S IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147
>SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.4 bits (53), Expect = 5.4
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -2
Query: 206 WVFSVATSSADGSTIFSLVSTSRRQL 129
W+FSVA S IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147
>SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.4 bits (53), Expect = 5.4
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -2
Query: 206 WVFSVATSSADGSTIFSLVSTSRRQL 129
W+FSVA S IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147
>SPBC19F8.01c |spn7|SPBC21.08c|septin Spn7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 428
Score = 25.4 bits (53), Expect = 5.4
Identities = 11/30 (36%), Positives = 14/30 (46%)
Frame = +3
Query: 336 GIENFDPTKLKHTETCEKNSLPTKDVIEQE 425
G+E P + H T +NSLP E E
Sbjct: 380 GLEVISPKEFPHRTTSSRNSLPNNTTKELE 409
>SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.4 bits (53), Expect = 5.4
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -2
Query: 206 WVFSVATSSADGSTIFSLVSTSRRQL 129
W+FSVA S IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147
>SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 497
Score = 25.4 bits (53), Expect = 5.4
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -2
Query: 209 FWVFSVATSSADGSTIFSLVSTSRRQLVLKPSS 111
FW +S+ S G I SL + RQ + +PSS
Sbjct: 83 FWGYSLTFSHEGGPYIGSLANFGLRQTLGRPSS 115
>SPBC29A3.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 398
Score = 25.0 bits (52), Expect = 7.1
Identities = 19/57 (33%), Positives = 33/57 (57%)
Frame = +1
Query: 64 PSLKDLPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGIEK 234
P K L K+ +L+S L+ SCL+D T+ K ++ +EKTQ+ +FD +++
Sbjct: 14 PGNKCLAKL-NELESILKDAKKSCLKDPTTSMKELV-----ACSEKTQQ-VFDDLKR 63
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 24.6 bits (51), Expect = 9.4
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -3
Query: 421 CSMTSFVGSEFFSHVSVCFSLVGSKFSMPF 332
C +TS +E S VC S+VG K PF
Sbjct: 1722 CLITSTSAAEKKSIFLVCCSIVGDKSVRPF 1751
>SPAC21E11.07 ||SPAC2C4.01|glycine cleavage
T-protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 325
Score = 24.6 bits (51), Expect = 9.4
Identities = 22/77 (28%), Positives = 41/77 (53%), Gaps = 4/77 (5%)
Frame = +2
Query: 296 RYRSGEGKEQIPERHRELR---SH*AEAHGNVREELAPHKGRH*AREISLNHYFITVTRK 466
RYR+G IPE +E+ S E++ + + + HKG + +E+++ Y+ VTRK
Sbjct: 182 RYRNG-----IPEGPQEIIPSISFPLESNMDWMKGIDFHKGCYLGQELTVRTYYTGVTRK 236
Query: 467 CI-SLVSPYFNIDVSKI 514
I + P + + S++
Sbjct: 237 RIFPFIIPNYEDNPSQV 253
>SPBC23E6.08 |sat1||Golgi membrane exchange factor subunit Sat1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 24.6 bits (51), Expect = 9.4
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +2
Query: 134 VSVTSTPMKRLCFRLLKTSPLR 199
V +T +P + CFRL + PLR
Sbjct: 134 VDITLSPGEEKCFRLKRRIPLR 155
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,139,885
Number of Sequences: 5004
Number of extensions: 43590
Number of successful extensions: 181
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -