Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20297
         (534 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF026213-7|AAB71308.2|  151|Caenorhabditis elegans Tetra thymosi...    52   3e-07
AC024819-3|AAF59587.2|  923|Caenorhabditis elegans Hypothetical ...    28   3.7  
Z81486-7|CAB03989.1|  480|Caenorhabditis elegans Hypothetical pr...    27   6.4  
Z72510-1|CAA96651.1|  572|Caenorhabditis elegans Hypothetical pr...    27   8.5  
AF040645-7|AAB94977.2|  304|Caenorhabditis elegans Hypothetical ...    27   8.5  
AF039040-2|AAO91670.1|  615|Caenorhabditis elegans Hypothetical ...    27   8.5  
AF039040-1|AAB94184.1|  553|Caenorhabditis elegans Hypothetical ...    27   8.5  
AF022981-2|AAG24200.1|  236|Caenorhabditis elegans Hypothetical ...    27   8.5  

>AF026213-7|AAB71308.2|  151|Caenorhabditis elegans Tetra thymosin
           (four thymosin repeatprotein) protein 1 protein.
          Length = 151

 Score = 52.0 bits (119), Expect = 3e-07
 Identities = 27/56 (48%), Positives = 36/56 (64%)
 Frame = +3

Query: 261 ETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKNSLPTKDVIEQEK 428
           ET EKN LP K+ +  EK+  + ++ IE+FD TKL  T   EK  LP+ D I+QEK
Sbjct: 28  ETTEKNVLPTKEDVAEEKQHVERIHEIEHFDSTKLHSTPVKEKIVLPSADDIKQEK 83



 Score = 46.4 bits (105), Expect = 1e-05
 Identities = 24/58 (41%), Positives = 33/58 (56%)
 Frame = +3

Query: 258 TETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKNSLPTKDVIEQEKS 431
           T  +EK  LP  D I+ EK+  +  + I NF    LK TET EKN LP+   + +EK+
Sbjct: 65  TPVKEKIVLPSADDIKQEKQHLELTDKINNFPSENLKKTETIEKNVLPSPTDVAREKT 122



 Score = 40.7 bits (91), Expect = 6e-04
 Identities = 25/62 (40%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
 Frame = +1

Query: 67  SLKDLPKVATDLKSQL-EGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGIEKFDS 243
           ++ +LPK+  +L   + EG     L+ V+T EK VLP+ EDVA EK        IE FDS
Sbjct: 3   AVTELPKMNQELAGAVREGLE---LKKVETTEKNVLPTKEDVAEEKQHVERIHEIEHFDS 59

Query: 244 SQ 249
           ++
Sbjct: 60  TK 61



 Score = 39.5 bits (88), Expect = 0.001
 Identities = 19/45 (42%), Positives = 26/45 (57%)
 Frame = +1

Query: 109 QLEGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGIEKFDS 243
           ++E F+++ L      EKIVLPSA+D+  EK    L D I  F S
Sbjct: 53  EIEHFDSTKLHSTPVKEKIVLPSADDIKQEKQHLELTDKINNFPS 97



 Score = 33.9 bits (74), Expect = 0.074
 Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
 Frame = +1

Query: 64  PSLKDLP--KVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEKT 204
           PS  D+   K   +L  ++  F +  L+  +T EK VLPS  DVA EKT
Sbjct: 74  PSADDIKQEKQHLELTDKINNFPSENLKKTETIEKNVLPSPTDVAREKT 122



 Score = 30.7 bits (66), Expect = 0.69
 Identities = 13/23 (56%), Positives = 17/23 (73%)
 Frame = +3

Query: 360 KLKHTETCEKNSLPTKDVIEQEK 428
           +LK  ET EKN LPTK+ + +EK
Sbjct: 23  ELKKVETTEKNVLPTKEDVAEEK 45



 Score = 28.3 bits (60), Expect = 3.7
 Identities = 18/46 (39%), Positives = 22/46 (47%)
 Frame = +3

Query: 243 EPAEHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTET 380
           E  + TET EKN LP    +  EK     L    +FD + L H ET
Sbjct: 98  ENLKKTETIEKNVLPSPTDVAREKT----LQMAASFDKSALHHVET 139


>AC024819-3|AAF59587.2|  923|Caenorhabditis elegans Hypothetical
           protein Y55B1AL.3a protein.
          Length = 923

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 18/67 (26%), Positives = 32/67 (47%)
 Frame = +2

Query: 2   FYPLPHQKYIDSEWPAP*VTLPP*KTSPRSPQT*RVSSKASTPAVSVTSTPMKRLCFRLL 181
           F P+P    + +   +     P   TSP+SP +   S++   P VSVTS P ++      
Sbjct: 19  FSPIPKFSRLRTPRTSREYVCPLKSTSPQSPSS---STENEPPPVSVTSPPARKRALEES 75

Query: 182 KTSPLRR 202
             +P+++
Sbjct: 76  TVTPIQQ 82


>Z81486-7|CAB03989.1|  480|Caenorhabditis elegans Hypothetical
           protein C53A5.9 protein.
          Length = 480

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +3

Query: 297 AIEAEKEKNKFLNGIENFDPTKLKHTETCEKNSLP 401
           AI    E++  L+ IE FDP KLK +    K  +P
Sbjct: 427 AIRGYDEESALLDQIERFDPKKLKWSIVPSKPHVP 461


>Z72510-1|CAA96651.1|  572|Caenorhabditis elegans Hypothetical
           protein F53B7.2 protein.
          Length = 572

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = -2

Query: 338 AVQEFVLFLLRFDSVFVRKRVLLLSLGVFSWLESNFSIPSNKDFWV--FSVATSS 180
           ++  F   + RFDS FV   V + ++     L ++FSI  N  F V  F + TS+
Sbjct: 4   SLSTFSFLINRFDSFFVSFSVCISNVFYLHKLSTSFSILKNDGFQVRAFRLMTST 58


>AF040645-7|AAB94977.2|  304|Caenorhabditis elegans Hypothetical
           protein F52C6.11 protein.
          Length = 304

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 18/45 (40%), Positives = 23/45 (51%)
 Frame = +1

Query: 55  SDTPSLKDLPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDV 189
           S   S K+  KVA   K QLE    SCL  ++T E+I    A D+
Sbjct: 243 SSEKSTKEKLKVAK--KYQLENLKASCLAKINTLEEIKAALAGDL 285


>AF039040-2|AAO91670.1|  615|Caenorhabditis elegans Hypothetical
           protein T22B11.4b protein.
          Length = 615

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 15/58 (25%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
 Frame = +3

Query: 261 ETQEKNPLPDKDAIEAEKEKNKFLN-GIENFDPTKLKHTETCEKNSLPTKDVIEQEKS 431
           E +EK    +    E+ +E++  L   +E+ +PTKLK  E  +K     ++  ++E++
Sbjct: 337 EEEEKKEEGETKKEESSEEEDGVLKVNLEDIEPTKLKSQEDAKKKEGDEEEEKDEEEA 394


>AF039040-1|AAB94184.1|  553|Caenorhabditis elegans Hypothetical
           protein T22B11.4a protein.
          Length = 553

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 15/58 (25%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
 Frame = +3

Query: 261 ETQEKNPLPDKDAIEAEKEKNKFLN-GIENFDPTKLKHTETCEKNSLPTKDVIEQEKS 431
           E +EK    +    E+ +E++  L   +E+ +PTKLK  E  +K     ++  ++E++
Sbjct: 337 EEEEKKEEGETKKEESSEEEDGVLKVNLEDIEPTKLKSQEDAKKKEGDEEEEKDEEEA 394


>AF022981-2|AAG24200.1|  236|Caenorhabditis elegans Hypothetical
           protein W03F9.2a protein.
          Length = 236

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = +3

Query: 249 AEHTETQEKNPLPDKDAIEAEKEKNKFLNGIE--NFD 353
           ++HTET+++ P  +K    A+K  N  L  +E  N+D
Sbjct: 191 SKHTETEKEAPPQEKSVTNAQKPGNPALLSLESRNYD 227


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,720,187
Number of Sequences: 27780
Number of extensions: 246424
Number of successful extensions: 922
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 869
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 922
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1060113800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)