Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20296
         (635 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    24   1.2  
DQ855491-1|ABH88178.1|  144|Tribolium castaneum chemosensory pro...    22   3.7  
U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       22   4.9  
AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    21   6.5  
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    21   8.6  
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    21   8.6  

>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = -1

Query: 410 ALGSLILPTGGGGSSYLFIDNGSIGNLCCTLSISRCKAGV-SNAELGSGP 264
           A GS  LP G G S+ L   NG +  L    S++     V SN    SGP
Sbjct: 39  ATGSNGLPAGAG-SNLLCASNGLVTTLASGSSLNGLTNNVPSNGLSSSGP 87


>DQ855491-1|ABH88178.1|  144|Tribolium castaneum chemosensory
           protein 5 protein.
          Length = 144

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = -3

Query: 552 ALVTKCLKCIEV 517
           ALVT C KC EV
Sbjct: 80  ALVTNCSKCSEV 91


>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = -1

Query: 392 LPTGGGGSSYLFI 354
           LPTG  G+SY+F+
Sbjct: 209 LPTGRLGASYVFV 221


>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +1

Query: 379 PPVGRMSEPSAW 414
           PP+   S+PSAW
Sbjct: 216 PPLQGFSDPSAW 227


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = +2

Query: 290 KLLLYNERWKECNRDCRWNHCL*RGMNFHPLQSE 391
           K  + ++R +   + CR+  CL  GM    +Q E
Sbjct: 126 KNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEE 159


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = -3

Query: 195 SLTPGSSYPWSIYGNASTTTSPAIFYKIYNSLYYEW 88
           ++TP  S   S+    S + SP  +   YNS  + W
Sbjct: 253 NITPHGSNTSSLITTPSPSASPLAYQHEYNS--FNW 286



 Score = 21.0 bits (42), Expect = 8.6
 Identities = 8/29 (27%), Positives = 15/29 (51%)
 Frame = -3

Query: 180 SSYPWSIYGNASTTTSPAIFYKIYNSLYY 94
           +S+ W+  G+   T+S   + + Y   YY
Sbjct: 282 NSFNWTANGHGHNTSSHNYYAQNYAPTYY 310


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,485
Number of Sequences: 336
Number of extensions: 3649
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16397237
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)