Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20296
(635 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 29 0.43
SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pomb... 27 2.3
SPCC338.07c |||NatA N-acetyltransferase complex subunit |Schizos... 27 2.3
SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces p... 27 3.0
SPCC594.06c |||SNARE Vam7 |Schizosaccharomyces pombe|chr 3|||Manual 26 4.0
SPBC725.03 |||conserved fungal protein|Schizosaccharomyces pombe... 26 5.2
SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase Met9|... 25 9.1
SPBC19C7.05 |||cell wall organization protein |Schizosaccharomyc... 25 9.1
SPBC1703.04 |mlh1||MutL family protein Mlh1 |Schizosaccharomyces... 25 9.1
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 25 9.1
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 29.5 bits (63), Expect = 0.43
Identities = 17/50 (34%), Positives = 28/50 (56%)
Frame = +1
Query: 274 PSSAFETPALQREMERVQQRLPMEPLSMKRYELPPPPVGRMSEPSAWAES 423
PS + +P++ ++ V RLP P+S R ++P PP + PS+ A S
Sbjct: 1041 PSPSALSPSVTPQLPPVSSRLP--PVSATRPQIPQPPPVSTALPSSSAVS 1088
>SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1073
Score = 27.1 bits (57), Expect = 2.3
Identities = 14/59 (23%), Positives = 27/59 (45%)
Frame = -2
Query: 313 SLVVKQEFQMQNLVLVLHFQIVLCGSIASALFFHHGQCSFSYSRIVISLVYIW*CIYDN 137
+L+ K + NL+L + IV CG + L + S+ +I+ +W +Y +
Sbjct: 316 NLIGKTGSSLGNLILPCYPYIVFCGDCSDTLVYDVSVSPMSFFGSLIACAPMWDFVYSS 374
>SPCC338.07c |||NatA N-acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 729
Score = 27.1 bits (57), Expect = 2.3
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +2
Query: 143 VDALPYIDQGYDDPGVREAALAMVE 217
+D + + D YDDP REAA +E
Sbjct: 547 LDLMSWEDSVYDDPSFREAAQGSIE 571
>SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1033
Score = 26.6 bits (56), Expect = 3.0
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +1
Query: 289 ETPALQREMERVQQRLPMEPLSMKRYELPPPPV 387
E ALQ E V+ M PL +K EL P P+
Sbjct: 676 ENTALQTEKIHVRDAKTMPPLLLKLSELQPEPL 708
>SPCC594.06c |||SNARE Vam7 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 341
Score = 26.2 bits (55), Expect = 4.0
Identities = 16/81 (19%), Positives = 33/81 (40%), Gaps = 2/81 (2%)
Frame = +2
Query: 239 PTKNYLKMQDQNQVLHLKLLLYNERWKECNRDCRWNHC--L*RGMNFHPLQSEE*VNQVP 412
P+K+++ N+ L L + + +C + W + + +N +E Q
Sbjct: 64 PSKSWVSSTVTNEKLRESRRLALQAYVQCLSETPWIKMPVVKKFLNIKDESEDETQGQFL 123
Query: 413 GPSQWITLMHSCLTKLSEFSI 475
GP+ WI + C L + +
Sbjct: 124 GPTDWIQVFQDCKRNLHMYRV 144
>SPBC725.03 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 257
Score = 25.8 bits (54), Expect = 5.2
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +2
Query: 122 KMAGEVVVDALPYIDQGYDDPGVREA 199
K G+V V LP G +DPGV EA
Sbjct: 183 KYQGDVKVSPLPSTLTGKEDPGVIEA 208
>SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase
Met9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 603
Score = 25.0 bits (52), Expect = 9.1
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +2
Query: 176 DDPGVREAALAMVEEECRR 232
DD GVRE + ++ E CR+
Sbjct: 246 DDEGVRERGVELIVEMCRK 264
>SPBC19C7.05 |||cell wall organization protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 150
Score = 25.0 bits (52), Expect = 9.1
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -3
Query: 219 SSTMANAASLTPGSSYPWSIYG 154
SS ++ ++ +SYPWS YG
Sbjct: 13 SSDGSSGTTIVQTNSYPWSAYG 34
>SPBC1703.04 |mlh1||MutL family protein Mlh1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 684
Score = 25.0 bits (52), Expect = 9.1
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = -1
Query: 179 RHILGLYMVMHLRQLLLPFSTKFITPFTTNGY 84
RHI G + HLR L I F+ NG+
Sbjct: 225 RHIYGPRVASHLRDFSLGEGQSSIVGFSANGF 256
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 25.0 bits (52), Expect = 9.1
Identities = 11/41 (26%), Positives = 18/41 (43%)
Frame = +1
Query: 265 GPEPSSAFETPALQREMERVQQRLPMEPLSMKRYELPPPPV 387
GP + P + E +Q++ P K+ L PPP+
Sbjct: 561 GPNNEEETKGPVIPETQETSEQQVHKTPSPEKQKVLSPPPI 601
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,661,168
Number of Sequences: 5004
Number of extensions: 55261
Number of successful extensions: 156
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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