Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20296
(635 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_1136 + 9012069-9012317,9013547-9013722,9014342-9014425,901... 65 4e-11
04_01_0034 - 401208-402923 33 0.19
10_08_0583 - 18952168-18952263,18953663-18953740,18954006-189540... 31 0.77
03_01_0415 + 3191392-3191952 31 0.77
05_01_0301 - 2356880-2357959 31 1.0
04_04_1097 - 30859963-30860302,30862130-30863058 30 1.3
08_02_0498 - 17815189-17815249,17815852-17815938,17816532-178165... 29 3.1
05_01_0556 - 4876849-4877328 29 3.1
05_03_0458 + 14280953-14281866,14281964-14282912 29 4.1
01_06_1300 + 36116511-36116636,36116672-36116734,36117782-361178... 29 4.1
12_02_0027 + 12427525-12427698,12430082-12430150,12430763-124308... 28 5.4
08_02_1553 + 27835320-27835364,27836853-27836966,27837062-278374... 28 5.4
09_04_0442 - 17630039-17630782 28 7.1
06_03_0343 + 19750914-19751047,19752091-19752676 28 7.1
12_02_0121 + 13919496-13919734,13919821-13919982,13920102-13920534 27 9.4
12_01_0389 + 3067808-3069121 27 9.4
03_06_0609 - 35042276-35042388,35042476-35042527,35042624-350427... 27 9.4
02_03_0360 + 18104948-18106159 27 9.4
>01_01_1136 +
9012069-9012317,9013547-9013722,9014342-9014425,
9014757-9014826,9015644-9015652
Length = 195
Score = 65.3 bits (152), Expect = 4e-11
Identities = 30/73 (41%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Frame = +1
Query: 268 PEPSSAFET-PALQREMERVQQRLPMEPLSMKRYELPPPPVGRMSEPSAWAESVDNSHAQ 444
P P+ FE P L +E ERV+ P + M RY L PPP + ++ +AW +++ N+ +Q
Sbjct: 76 PVPAIGFENHPMLAKEYERVRAGKPPATIEMSRYGLEPPPANKRNDVAAWRQALRNAQSQ 135
Query: 445 LSHQAIRVLNLEV 483
L HQ IR+ NLE+
Sbjct: 136 LHHQIIRIENLEL 148
Score = 40.7 bits (91), Expect = 0.001
Identities = 19/30 (63%), Positives = 20/30 (66%)
Frame = +2
Query: 143 VDALPYIDQGYDDPGVREAALAMVEEECRR 232
VDALPYID Y DP V+ MVEEE RR
Sbjct: 33 VDALPYIDGDYGDPAVKREVDRMVEEEMRR 62
>04_01_0034 - 401208-402923
Length = 571
Score = 33.1 bits (72), Expect = 0.19
Identities = 20/75 (26%), Positives = 30/75 (40%), Gaps = 1/75 (1%)
Frame = +1
Query: 187 SKRSCIGHGGRRVQTL*THKELS-ENAGPEPSSAFETPALQREMERVQQRLPMEPLSMKR 363
SK++ G + H ENA P A P ++ + Q P PL +
Sbjct: 246 SKKNAAAIGKENASPVHHHHHCGKENAPPAAKQAAAAPPMRAPLAEQQPHAPRLPLQPRP 305
Query: 364 YELPPPPVGRMSEPS 408
PPPP + ++PS
Sbjct: 306 APPPPPPQQQRAKPS 320
>10_08_0583 -
18952168-18952263,18953663-18953740,18954006-18954081,
18954687-18954735,18955271-18955469,18955761-18955799,
18955800-18956123
Length = 286
Score = 31.1 bits (67), Expect = 0.77
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +1
Query: 253 SENAGPEPSSAFETPALQREMERVQQRLPMEPLSMKRYELPP 378
S +A ++AF +QRE + V+++ P +M+ LPP
Sbjct: 6 SSSASSAAAAAFRPAVVQREQQVVEEKFPAAAAAMREMVLPP 47
>03_01_0415 + 3191392-3191952
Length = 186
Score = 31.1 bits (67), Expect = 0.77
Identities = 21/78 (26%), Positives = 32/78 (41%), Gaps = 1/78 (1%)
Frame = +1
Query: 238 THKELSENAGPEPSSAFETPALQREMERVQQRLPMEPLSMKRYELPPPPVGR-MSEPSAW 414
+H++ S + +PSS F +P R V R +S+ PPPP R S P
Sbjct: 11 SHQQQSSDRRRKPSSHFASPQSMRGFNAVNCRAFHSSVSIGILPSPPPPPARTYSSPEPK 70
Query: 415 AESVDNSHAQLSHQAIRV 468
H + +AI +
Sbjct: 71 TPKSQPHHGKKRSRAISI 88
>05_01_0301 - 2356880-2357959
Length = 359
Score = 30.7 bits (66), Expect = 1.0
Identities = 11/33 (33%), Positives = 22/33 (66%)
Frame = -3
Query: 231 RLHSSSTMANAASLTPGSSYPWSIYGNASTTTS 133
R S+ M +++S +PG+S+ W +Y +S+ +S
Sbjct: 144 RFRRSAVMPSSSSSSPGASHRWHVYSASSSASS 176
>04_04_1097 - 30859963-30860302,30862130-30863058
Length = 422
Score = 30.3 bits (65), Expect = 1.3
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = -1
Query: 434 ELSTDSAQALGSLILPTGGGGSSYLFIDNGSIGN 333
E S S +L SL T GGGS + +DN S+G+
Sbjct: 39 ESSNMSIDSLNSLQTSTHGGGSVAMSVDNSSVGS 72
>08_02_0498 -
17815189-17815249,17815852-17815938,17816532-17816587,
17816625-17816721,17817085-17817152
Length = 122
Score = 29.1 bits (62), Expect = 3.1
Identities = 11/14 (78%), Positives = 13/14 (92%)
Frame = -1
Query: 263 AFSDSSLWVYSVCT 222
AFS SS+W+YSVCT
Sbjct: 71 AFSLSSVWIYSVCT 84
>05_01_0556 - 4876849-4877328
Length = 159
Score = 29.1 bits (62), Expect = 3.1
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +1
Query: 205 GHGGRRVQTL*THKELSENAGPEPSSAFETPAL 303
GHGGR K+ +E++G P + +TPA+
Sbjct: 33 GHGGRHDPGNPVSKQAAEHSGQRPCRSLQTPAI 65
>05_03_0458 + 14280953-14281866,14281964-14282912
Length = 620
Score = 28.7 bits (61), Expect = 4.1
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = +1
Query: 274 PSSAFETPALQREMERVQQRLPMEPLSMKRYELPPPPVGRMSEPSA 411
PSS+ +P ++ LP LS + PPPP + PSA
Sbjct: 58 PSSSPSSPPPLPPLQPTPPPLPPTTLSCSSHPTPPPPPSPTTSPSA 103
>01_06_1300 +
36116511-36116636,36116672-36116734,36117782-36117833,
36118144-36118224,36118651-36118775,36118831-36118934,
36119487-36119615,36119899-36121054
Length = 611
Score = 28.7 bits (61), Expect = 4.1
Identities = 17/47 (36%), Positives = 23/47 (48%)
Frame = +3
Query: 369 TSTPSSRKNE*TKCLGRVSG*LSCTAVSPSYQSSQFRSCS*STVQKQ 509
T+TP S K LG + G + VSP Y++ R TV+KQ
Sbjct: 505 TATPESFKTTSFLSLGSLDGSVKSFDVSPQYRARSKRMALTKTVEKQ 551
>12_02_0027 +
12427525-12427698,12430082-12430150,12430763-12430823,
12431147-12431264,12431346-12431422,12432881-12432996,
12433227-12433661
Length = 349
Score = 28.3 bits (60), Expect = 5.4
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Frame = +1
Query: 250 LSENAGPEPSSAFETPALQR---EMERVQQRLPMEPLSMKRYELPPPPVG-RMSEPSA 411
L + E +FE P + E +R Q + M P S + + +PP P+G R P A
Sbjct: 145 LPQKRSSETVDSFEDPFWRMKDCEKKRYCQMVLMNPFSGETFTMPPAPLGLRCGRPKA 202
>08_02_1553 +
27835320-27835364,27836853-27836966,27837062-27837457,
27837751-27837822,27837957-27838082,27838164-27838244,
27838364-27838558,27839018-27840013
Length = 674
Score = 28.3 bits (60), Expect = 5.4
Identities = 19/70 (27%), Positives = 27/70 (38%)
Frame = +1
Query: 196 SCIGHGGRRVQTL*THKELSENAGPEPSSAFETPALQREMERVQQRLPMEPLSMKRYELP 375
S G+G R KE A PSS ++ A Q E E+ + P+ + + P
Sbjct: 423 SSSGNGSVRSSVSAAAKEQRRRASSLPSSCAQSVASQDEYEQSGSSVMSSPVRLHKLAPP 482
Query: 376 PPPVGRMSEP 405
P P P
Sbjct: 483 PLPAAHNVPP 492
>09_04_0442 - 17630039-17630782
Length = 247
Score = 27.9 bits (59), Expect = 7.1
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +1
Query: 325 QQRLPMEPLSMKRYELPPPPVGRMSEPSAWAE 420
++RLP+ P + P PPVG+ + + W E
Sbjct: 200 RRRLPIHPPPRLKPPPPHPPVGKRATGAGWVE 231
>06_03_0343 + 19750914-19751047,19752091-19752676
Length = 239
Score = 27.9 bits (59), Expect = 7.1
Identities = 15/57 (26%), Positives = 25/57 (43%)
Frame = +1
Query: 253 SENAGPEPSSAFETPALQREMERVQQRLPMEPLSMKRYELPPPPVGRMSEPSAWAES 423
++N+ +S+ E P+ E + R M + Y+ PPPP + P W S
Sbjct: 45 TQNSNGLSNSSLELPS---EHHFLAARTGMNGFAPTGYQQPPPPPAASASPGGWIAS 98
>12_02_0121 + 13919496-13919734,13919821-13919982,13920102-13920534
Length = 277
Score = 27.5 bits (58), Expect = 9.4
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = +1
Query: 271 EPSSAFETPALQREMERVQQRLPMEPLSMKRYELPPPPVGRMSEP 405
E A T R E++ R PM PLSM +PPP ++P
Sbjct: 169 EGGMAVVTSIAGRHCEKL--RWPMTPLSMLPMSIPPPRPSLQADP 211
>12_01_0389 + 3067808-3069121
Length = 437
Score = 27.5 bits (58), Expect = 9.4
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -1
Query: 347 GSIGNLCCTLSISRCKAGVSNA 282
G++G LCC L + C AGV A
Sbjct: 390 GAVGKLCCVLQ-AECDAGVKEA 410
>03_06_0609 -
35042276-35042388,35042476-35042527,35042624-35042725,
35043546-35043745,35045258-35045336,35045541-35045595,
35045947-35046122,35046386-35046988,35047077-35047265,
35048150-35048201,35048289-35048356,35048873-35048911,
35048912-35048970,35049639-35049782,35050136-35050238,
35050368-35050467,35050596-35050612
Length = 716
Score = 27.5 bits (58), Expect = 9.4
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = +1
Query: 265 GPEPSSAFETPALQREMERVQQRLPMEPLSMKR-YELPPPPVGRMSEPSAWAESVDNSHA 441
GP P S +L ME++ + S K +E+PP +G + E A+ S+ +SH
Sbjct: 353 GPHPHSG----SLDYYMEKLFSDIGSTAASTKECFEVPPKAIGVVCERMAFPLSLKHSHD 408
Query: 442 QLS 450
+S
Sbjct: 409 YIS 411
>02_03_0360 + 18104948-18106159
Length = 403
Score = 27.5 bits (58), Expect = 9.4
Identities = 15/51 (29%), Positives = 26/51 (50%)
Frame = +2
Query: 173 YDDPGVREAALAMVEEECRRYRPTKNYLKMQDQNQVLHLKLLLYNERWKEC 325
+DD G E + + EE+ RY KN +++Q H +L ++ W +C
Sbjct: 357 WDDGGCSERSKDLDEEDAERYEAIKN---LREQMLAGH-GFVLVSQEWGQC 403
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,688,739
Number of Sequences: 37544
Number of extensions: 388983
Number of successful extensions: 1305
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1304
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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