Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20296
         (635 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40415| Best HMM Match : No HMM Matches (HMM E-Value=.)              69   3e-12
SB_29944| Best HMM Match : PPI_Ypi1 (HMM E-Value=1.6)                  36   0.036
SB_36932| Best HMM Match : HTH_8 (HMM E-Value=1.4)                     31   0.59 
SB_11878| Best HMM Match : efhand (HMM E-Value=1.6)                    31   0.59 
SB_45513| Best HMM Match : COXG (HMM E-Value=1.3)                      31   1.0  
SB_26064| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.4  
SB_49481| Best HMM Match : Trigger_C (HMM E-Value=1.6)                 29   3.2  
SB_19890| Best HMM Match : Drf_FH1 (HMM E-Value=2.4)                   29   4.2  
SB_15012| Best HMM Match : zf-CCHC (HMM E-Value=1.1e-05)               28   7.3  
SB_47099| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.3  
SB_54054| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  
SB_13763| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  

>SB_40415| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1512

 Score = 68.9 bits (161), Expect = 3e-12
 Identities = 33/47 (70%), Positives = 36/47 (76%), Gaps = 2/47 (4%)
 Frame = +2

Query: 122  KMAG--EVVVDALPYIDQGYDDPGVREAALAMVEEECRRYRPTKNYL 256
            KMA   EV  DALPY DQGY++PGVRE    +VEEE RRYRPTKNYL
Sbjct: 1334 KMASFHEVAPDALPYYDQGYEEPGVREMVNQLVEEETRRYRPTKNYL 1380



 Score = 34.3 bits (75), Expect = 0.084
 Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
 Frame = +1

Query: 268  PEPS-SAFETPALQREMERVQQRLPMEPLSMKRYELPPPPVGRMSEPSAWAESVDNSHAQ 444
            P P+   F TP L+ E +R+ ++ PM+ LSMKR  +    +     PS W    D     
Sbjct: 1384 PTPNYDVFVTPVLKNEFDRISRKQPMDLLSMKR--IINLEILSKYGPSGWRTHNDLLTRM 1441

Query: 445  LSHQAIRVLNL 477
            L  Q   ++N+
Sbjct: 1442 LEQQQKLLMNI 1452


>SB_29944| Best HMM Match : PPI_Ypi1 (HMM E-Value=1.6)
          Length = 351

 Score = 35.5 bits (78), Expect = 0.036
 Identities = 13/37 (35%), Positives = 24/37 (64%)
 Frame = +1

Query: 271 EPSSAFETPALQREMERVQQRLPMEPLSMKRYELPPP 381
           E +++ +T   + E ER+++  PM PL+   Y++PPP
Sbjct: 228 ERATSLQTSGNETESERMEENEPMSPLNSPLYDMPPP 264


>SB_36932| Best HMM Match : HTH_8 (HMM E-Value=1.4)
          Length = 721

 Score = 31.5 bits (68), Expect = 0.59
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = +1

Query: 220 RVQTL*THKELSENAGPEPSSAFETPALQREMERVQQRLPMEP 348
           R+Q L   ++L+E +GPEP   F TPA    M R + +  + P
Sbjct: 98  RMQEL-RKRKLAEESGPEPEVEFMTPAFSSRMTRKRAKDKVSP 139


>SB_11878| Best HMM Match : efhand (HMM E-Value=1.6)
          Length = 190

 Score = 31.5 bits (68), Expect = 0.59
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -1

Query: 161 YMVMHLRQLLLPFSTKFITPFTTNGYCDLSLY 66
           Y+ +HL  L LP+   FI  FTT+   D+++Y
Sbjct: 78  YICLHLTNLGLPYKDAFIGQFTTHVKSDITIY 109


>SB_45513| Best HMM Match : COXG (HMM E-Value=1.3)
          Length = 296

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 22/88 (25%), Positives = 38/88 (43%)
 Frame = +1

Query: 184 WSKRSCIGHGGRRVQTL*THKELSENAGPEPSSAFETPALQREMERVQQRLPMEPLSMKR 363
           + K  C+ +   R   +  H+  +E    +   A    A  +++++   R+P +P   K 
Sbjct: 33  YEKDPCVKYDSNRKVWIYLHRNRTEEEFEKIHQANAAAARAKKLQK--PRVPRQPKQAKE 90

Query: 364 YELPPPPVGRMSEPSAWAESVDNSHAQL 447
            E   PPV    +PSA   SV +  A L
Sbjct: 91  -ETSSPPVAEAIDPSAAIASVASPSASL 117


>SB_26064| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 496

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 16/84 (19%), Positives = 39/84 (46%)
 Frame = -2

Query: 409 HLVHSFFRLEGVEVHTSS*TMVPSAISVALFPSLVVKQEFQMQNLVLVLHFQIVLCGSIA 230
           H  ++F  +  V V     T     I + +  S ++K  + +  ++L+    +++  S++
Sbjct: 413 HKTNTFIIIYVVFVADIIITTTTIIIIIIISSSSIIKNFYSIAIVILITIIVVIISKSVS 472

Query: 229 SALFFHHGQCSFSYSRIVISLVYI 158
            A+FF    CS +   I  + +++
Sbjct: 473 DAIFFTSNGCSINEDLINTTALFV 496


>SB_49481| Best HMM Match : Trigger_C (HMM E-Value=1.6)
          Length = 342

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = +1

Query: 259 NAGPEPSSAFETPALQREMERVQQRLPMEPLSMKRYELPP 378
           N+ P P++   T +L RE    Q  L  + LS  RY  PP
Sbjct: 33  NSRPNPTARSNTNSLGREPGHQQLTLYFKELSASRYAAPP 72


>SB_19890| Best HMM Match : Drf_FH1 (HMM E-Value=2.4)
          Length = 169

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +1

Query: 295 PALQREMERVQQRLPMEPLSMKRYELPPPPVGRMSEP 405
           PA++R      ++ P +  S KR E  PPPV  +  P
Sbjct: 52  PAVRRVPPPAPKKAPEDATSPKRNEAAPPPVNEVPPP 88


>SB_15012| Best HMM Match : zf-CCHC (HMM E-Value=1.1e-05)
          Length = 410

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 27/85 (31%), Positives = 36/85 (42%), Gaps = 5/85 (5%)
 Frame = +1

Query: 196 SCIGHGGRRVQTL*THKELSENAGPEPSS-AFETPALQREMERVQQRLPM---EPLSMKR 363
           S  G  G  V T         +A P  SS +   P+ Q E   V   +P    + LS   
Sbjct: 202 SVAGGAGTPVATSADRSVAPGDAEPVSSSISVSVPSAQAEQATVAMEVPEVQGDSLSDVD 261

Query: 364 YELPPPPVGRMSEPSAWAE-SVDNS 435
            +   PPV R+SEP   +E S+D S
Sbjct: 262 IDAIIPPVRRVSEPDQLSESSIDES 286


>SB_47099| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 163

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +2

Query: 134 EVVVDALPYIDQGYDDPGVREAALAMVEEECRRYRPTKNYLK 259
           + V DAL Y    YD    ++  + +V  ECRRY      L+
Sbjct: 72  KAVEDALVYAASTYDYSRFKKPDVYLVSGECRRYEELAKILR 113


>SB_54054| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4232

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +1

Query: 283  AFETPALQREMERVQQRLPMEPLSMKRYELPPPPVGRMSEP 405
            AFE   L   M  +  R  + P SMKR ++PP  V     P
Sbjct: 3834 AFELAPLVAHMYNISLRQGILPSSMKRAQMPPKRVDEDIRP 3874


>SB_13763| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 319

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 22/73 (30%), Positives = 31/73 (42%)
 Frame = +1

Query: 223 VQTL*THKELSENAGPEPSSAFETPALQREMERVQQRLPMEPLSMKRYELPPPPVGRMSE 402
           + TL     L  N  P P S+        E+  ++   P++P      E PPP   R S 
Sbjct: 128 IATLVGDSALGTNIKPAPYSSCPFHFKSYEINSLRSSKPIDPGDPLVLERPPP---RWSS 184

Query: 403 PSAWAESVDNSHA 441
            S ++ES  NS A
Sbjct: 185 NSPYSESYYNSLA 197


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,193,168
Number of Sequences: 59808
Number of extensions: 428972
Number of successful extensions: 1216
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1213
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1596754500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)