Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20296
         (635 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U13019-8|AAC24446.2|  238|Caenorhabditis elegans Hypothetical pr...    52   3e-07
Z48367-5|CAE54886.1|  993|Caenorhabditis elegans Hypothetical pr...    31   0.69 
Z48367-4|CAA88324.1| 1110|Caenorhabditis elegans Hypothetical pr...    31   0.69 
U88180-1|AAB42294.1|  203|Caenorhabditis elegans Hypothetical pr...    31   0.69 
U67953-3|AAL13328.1|  321|Caenorhabditis elegans Hypothetical pr...    30   1.2  
AY204183-1|AAO39187.1|  406|Caenorhabditis elegans nuclear recep...    30   1.6  
AL132948-14|CAD91709.1|  399|Caenorhabditis elegans Hypothetical...    30   1.6  
AL132948-13|CAD31815.2|  509|Caenorhabditis elegans Hypothetical...    30   1.6  
U88170-2|AAB42250.1|  203|Caenorhabditis elegans Hypothetical pr...    29   2.1  
U40955-2|AAA81748.2|   89|Caenorhabditis elegans Hypothetical pr...    29   2.1  
AC024200-12|AAF36010.2| 1232|Caenorhabditis elegans Hypothetical...    29   2.8  
Z83228-3|CAB60998.1|  536|Caenorhabditis elegans Hypothetical pr...    28   4.9  
Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical pr...    28   4.9  
Z48783-4|CAA88698.1|  359|Caenorhabditis elegans Hypothetical pr...    28   4.9  
AF145377-1|AAD39816.1|  536|Caenorhabditis elegans MOM-4 protein.      28   4.9  
AF143242-1|AAD37359.1|  536|Caenorhabditis elegans protein kinas...    28   4.9  
U97008-3|AAB52308.1|  380|Caenorhabditis elegans Hypothetical pr...    27   8.5  
AL031630-10|CAA20990.1|  363|Caenorhabditis elegans Hypothetical...    27   8.5  

>U13019-8|AAC24446.2|  238|Caenorhabditis elegans Hypothetical
           protein T12A2.7 protein.
          Length = 238

 Score = 52.4 bits (120), Expect = 3e-07
 Identities = 22/41 (53%), Positives = 32/41 (78%)
 Frame = +2

Query: 134 EVVVDALPYIDQGYDDPGVREAALAMVEEECRRYRPTKNYL 256
           +V+VDALPY+D  Y++   R+ A+ +VE EC+ +RPTKNYL
Sbjct: 21  QVLVDALPYLDTEYNEAD-RQLAMKLVEHECKTFRPTKNYL 60



 Score = 49.2 bits (112), Expect = 2e-06
 Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
 Frame = +1

Query: 268 PEPS-SAFETPALQREMERVQQRLPMEPLSMKRYELPPPPVGRMSEPSAWAESVDNSHAQ 444
           P P   AF T  + +EM+R++++  M  L M R ELP P   +  +   WA+ + N+ AQ
Sbjct: 64  PVPDYDAFLTKCMLKEMDRMKKKEEMGKLDMSRCELPAPSAVKGVDRKLWAKVLRNAKAQ 123

Query: 445 LSHQAIRVLNLEV 483
             H  +R +NLE+
Sbjct: 124 NEHLLMRQINLEL 136


>Z48367-5|CAE54886.1|  993|Caenorhabditis elegans Hypothetical
           protein C33B4.3b protein.
          Length = 993

 Score = 31.1 bits (67), Expect = 0.69
 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
 Frame = +1

Query: 220 RVQTL*THKELSENAGPEPSSAFETPALQRE--MERVQQRLPMEPLSMKRYELPPPPV 387
           R+ +  +  +  E   P P+S + +P LQR+  M+R +   P  P S  +   PPPP+
Sbjct: 674 RMDSFDSFDDEDEMPAPPPAS-YISPDLQRDSSMQRSEYSRPFRPTSRPKTPPPPPPM 730


>Z48367-4|CAA88324.1| 1110|Caenorhabditis elegans Hypothetical
           protein C33B4.3a protein.
          Length = 1110

 Score = 31.1 bits (67), Expect = 0.69
 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
 Frame = +1

Query: 220 RVQTL*THKELSENAGPEPSSAFETPALQRE--MERVQQRLPMEPLSMKRYELPPPPV 387
           R+ +  +  +  E   P P+S + +P LQR+  M+R +   P  P S  +   PPPP+
Sbjct: 674 RMDSFDSFDDEDEMPAPPPAS-YISPDLQRDSSMQRSEYSRPFRPTSRPKTPPPPPPM 730


>U88180-1|AAB42294.1|  203|Caenorhabditis elegans Hypothetical
           protein T27A3.4 protein.
          Length = 203

 Score = 31.1 bits (67), Expect = 0.69
 Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
 Frame = +1

Query: 133 RSCRRCITIYRPRI*RSWSKRSCIGHGGRRVQTL*T--HKELSENAGPEPSSAFETPALQ 306
           RS +R  +  RPR  RS S+ S     G R  +     H+  S+  G   S+A +TPA +
Sbjct: 127 RSSKRSRSRSRPRT-RSGSRSSSRSRSGSRRSSRRRSRHRSSSKARGRRASTAKKTPAKR 185

Query: 307 REMERVQQRL 336
           R   R QQ++
Sbjct: 186 RSRSRSQQKV 195


>U67953-3|AAL13328.1|  321|Caenorhabditis elegans Hypothetical
           protein ZC13.2 protein.
          Length = 321

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 16/55 (29%), Positives = 27/55 (49%)
 Frame = -2

Query: 292 FQMQNLVLVLHFQIVLCGSIASALFFHHGQCSFSYSRIVISLVYIW*CIYDNFSC 128
           F    L+LV+ FQI   G + S +FF       + S  + ++V ++ C +  F C
Sbjct: 203 FNTTILILVVLFQIAHAGLVTSLIFFQREMSWRTLSITIGTIVILFCCAFLGFVC 257


>AY204183-1|AAO39187.1|  406|Caenorhabditis elegans nuclear receptor
           NHR-95 protein.
          Length = 406

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +1

Query: 127 GRRSCRRCITIYRPRI*RSWSKRSCIGHGGRRVQTL 234
           G  SCR C   +R  +   WS+  C+G    ++  L
Sbjct: 35  GVNSCRACAAFFRRTVNSKWSRMRCLGGSCNQISFL 70


>AL132948-14|CAD91709.1|  399|Caenorhabditis elegans Hypothetical
           protein Y39B6A.17b protein.
          Length = 399

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +1

Query: 127 GRRSCRRCITIYRPRI*RSWSKRSCIGHGGRRVQTL 234
           G  SCR C   +R  +   WS+  C+G    ++  L
Sbjct: 28  GVNSCRACAAFFRRTVNSKWSRMRCLGGSCNQISFL 63


>AL132948-13|CAD31815.2|  509|Caenorhabditis elegans Hypothetical
           protein Y39B6A.17a protein.
          Length = 509

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +1

Query: 127 GRRSCRRCITIYRPRI*RSWSKRSCIGHGGRRVQTL 234
           G  SCR C   +R  +   WS+  C+G    ++  L
Sbjct: 28  GVNSCRACAAFFRRTVNSKWSRMRCLGGSCNQISFL 63


>U88170-2|AAB42250.1|  203|Caenorhabditis elegans Hypothetical
           protein C10G11.9 protein.
          Length = 203

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
 Frame = +1

Query: 133 RSCRRCITIYRPRI*RSWSKRSCIGHGG-RRVQTL*THKELSENA-GPEPSSAFETPALQ 306
           RS +R  +  RPR  RS S+ S     G RR     + +  S  A G   S+A +TPA +
Sbjct: 127 RSSKRSRSRSRPRT-RSGSRSSSRSRSGSRRSSRRRSRRRSSSKARGRRASTAKKTPAKR 185

Query: 307 REMERVQQRL 336
           R   R QQ++
Sbjct: 186 RSRSRSQQKV 195


>U40955-2|AAA81748.2|   89|Caenorhabditis elegans Hypothetical
           protein F48B9.4 protein.
          Length = 89

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -3

Query: 207 ANAASLTPGSSYPWSIYGNASTTTSPAIFYKIYNS 103
           AN    TP S      YGN+    +P + Y+ YNS
Sbjct: 22  ANVVDATPRSQGNMMRYGNSLPAYAPHVLYRFYNS 56


>AC024200-12|AAF36010.2| 1232|Caenorhabditis elegans Hypothetical
           protein Y71F9AL.17 protein.
          Length = 1232

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = +1

Query: 289 ETPALQREMERVQQRLP-MEPLSMKRYELPPPPVGRMSE 402
           E   L+ E+E  QQ +P ++P +  R  +PPPPV R+ E
Sbjct: 774 EAEELKAELESRQQPIPPVDPNA--RLLVPPPPVARLEE 810


>Z83228-3|CAB60998.1|  536|Caenorhabditis elegans Hypothetical
           protein F52F12.3 protein.
          Length = 536

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 17/60 (28%), Positives = 22/60 (36%)
 Frame = +1

Query: 205 GHGGRRVQTL*THKELSENAGPEPSSAFETPALQREMERVQQRLPMEPLSMKRYELPPPP 384
           GH   R +T     +L     P  + A   P  Q E +  + R   E     R   PPPP
Sbjct: 368 GHRRNRSETFVVQPDLPYPTVPGEAGASRIPKSQSEAKNFRDRAKSEQRQPHRDARPPPP 427


>Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical
           protein F28D9.1 protein.
          Length = 601

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 14/46 (30%), Positives = 20/46 (43%)
 Frame = +1

Query: 274 PSSAFETPALQREMERVQQRLPMEPLSMKRYELPPPPVGRMSEPSA 411
           PS++   P  +R     Q + P    +  R + PP P  R   PSA
Sbjct: 308 PSASKSPPPARRRRSPSQSKSPAPKRAKSRSKSPPAPARRRRSPSA 353


>Z48783-4|CAA88698.1|  359|Caenorhabditis elegans Hypothetical
           protein F33H1.3 protein.
          Length = 359

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
 Frame = +1

Query: 262 AGPEPSSAFETPALQREMERVQQRLPMEPLSMKRYELPPPPVG---RMSEPSAWAESVDN 432
           AGPE ++    PA+ +   +V+ +LP  P+ +   + P PP G     S+     E V +
Sbjct: 148 AGPERNNQLLAPAMIKR--KVEFQLPPRPVRVAGQKPPGPPCGLAPNFSDSEEEEEEVHD 205

Query: 433 SH 438
            H
Sbjct: 206 DH 207


>AF145377-1|AAD39816.1|  536|Caenorhabditis elegans MOM-4 protein.
          Length = 536

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 17/60 (28%), Positives = 22/60 (36%)
 Frame = +1

Query: 205 GHGGRRVQTL*THKELSENAGPEPSSAFETPALQREMERVQQRLPMEPLSMKRYELPPPP 384
           GH   R +T     +L     P  + A   P  Q E +  + R   E     R   PPPP
Sbjct: 368 GHRRNRSETFVVQPDLPYPTVPGEAGASRIPKSQSEAKNFRDRAKSEQRQPHRDARPPPP 427


>AF143242-1|AAD37359.1|  536|Caenorhabditis elegans protein kinase
           MOM-4 protein.
          Length = 536

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 17/60 (28%), Positives = 22/60 (36%)
 Frame = +1

Query: 205 GHGGRRVQTL*THKELSENAGPEPSSAFETPALQREMERVQQRLPMEPLSMKRYELPPPP 384
           GH   R +T     +L     P  + A   P  Q E +  + R   E     R   PPPP
Sbjct: 368 GHRRNRSETFVVQPDLPYPTVPGEAGASRIPKSQSEAKNFRDRAKSEQRQPHRDARPPPP 427


>U97008-3|AAB52308.1|  380|Caenorhabditis elegans Hypothetical
           protein C03G6.8 protein.
          Length = 380

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +2

Query: 305 NERWKECNRDCRWNHCL*RGMNFHPLQSEE 394
           NE +  C R CR+  C+  GMN + +QS E
Sbjct: 70  NEPYLRC-RACRYKKCIDVGMNRNGIQSSE 98


>AL031630-10|CAA20990.1|  363|Caenorhabditis elegans Hypothetical
           protein Y38H6C.11 protein.
          Length = 363

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 14/69 (20%), Positives = 31/69 (44%)
 Frame = +2

Query: 137 VVVDALPYIDQGYDDPGVREAALAMVEEECRRYRPTKNYLKMQDQNQVLHLKLLLYNERW 316
           V++D L  + Q    P  +   +A ++     Y     +  ++D N +L + + +++   
Sbjct: 288 VIIDHLQVLRQFDVQPKHQPPTIAALQLSYPAYTYHVQFFDVEDSNNILVVSISIFDVTG 347

Query: 317 KECNRDCRW 343
             C+RD  W
Sbjct: 348 SICSRDHIW 356


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,988,786
Number of Sequences: 27780
Number of extensions: 326225
Number of successful extensions: 1111
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1031
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1108
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)