Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20296
         (635 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   0.61 
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           22   4.3  
X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor pro...    21   7.6  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    21   7.6  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    21   7.6  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 25.0 bits (52), Expect = 0.61
 Identities = 20/86 (23%), Positives = 36/86 (41%)
 Frame = +1

Query: 205 GHGGRRVQTL*THKELSENAGPEPSSAFETPALQREMERVQQRLPMEPLSMKRYELPPPP 384
           G GG  ++TL    + +    P    A   P +Q+    +    P + +  + Y +P   
Sbjct: 732 GSGGDSLRTLLQRGQETGAEWPGLEHANIGPYIQK---MIAAAAPFKGMETQDYRIPEVM 788

Query: 385 VGRMSEPSAWAESVDNSHAQLSHQAI 462
              MSE    ++SV+   +Q  HQ +
Sbjct: 789 RRLMSEDKRLSKSVNGDQSQPPHQQL 814


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 6/17 (35%), Positives = 10/17 (58%)
 Frame = -2

Query: 574 NWLWFVLSSCD*MLEVY 524
           NW W  + +CD +  V+
Sbjct: 233 NWEWHTVGNCDGLTSVF 249


>X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor
           protein.
          Length = 283

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +1

Query: 295 PALQREMERVQQRLPMEPLSMKRYELPPPPVGRMSEPSA 411
           P L+RE E   +     P+ + +   P P + R +EP A
Sbjct: 85  PRLRREAELEAEPGNNRPVYISQPRPPHPRLRREAEPEA 123



 Score = 21.4 bits (43), Expect = 7.6
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +1

Query: 295 PALQREMERVQQRLPMEPLSMKRYELPPPPVGRMSEPSA 411
           P L+RE E   +     P+ + +   P P + R +EP A
Sbjct: 141 PRLRREAELEAEPGNNRPVYISQPRPPHPRLRREAEPEA 179


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = +2

Query: 290 KLLLYNERWKECNRDCRWNHCL*RGMNFHPLQSE 391
           K  + ++R +   + CR+  CL  GM    +Q E
Sbjct: 150 KSCIIDKRQRNRCQYCRYQKCLAMGMKREAVQEE 183


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = +2

Query: 290 KLLLYNERWKECNRDCRWNHCL*RGMNFHPLQSE 391
           K  + ++R +   + CR+  CL  GM    +Q E
Sbjct: 150 KSCIIDKRQRNRCQYCRYQKCLAMGMKREAVQEE 183


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,378
Number of Sequences: 438
Number of extensions: 4406
Number of successful extensions: 19
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19071468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)