Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20295
         (570 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0572 + 4218610-4218881,4218991-4219169,4219286-4219464           29   2.6  
03_01_0300 + 2350232-2352274,2352349-2352669,2352752-2352838,235...    29   3.4  
12_01_0378 - 2946916-2947590                                           28   4.6  
02_05_0366 - 28313190-28313601,28313759-28314225,28315044-283157...    28   4.6  
06_03_0095 - 16575938-16576585,16577028-16577219,16577294-165773...    27   8.0  
03_06_0460 - 34098115-34098622,34098981-34099355,34100939-341011...    27   8.0  

>03_01_0572 + 4218610-4218881,4218991-4219169,4219286-4219464
          Length = 209

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 21/69 (30%), Positives = 29/69 (42%)
 Frame = +3

Query: 231 DTKQQDELMEYAYQLWLQGSKDIVRDCFPVEFRLIFAENAIKLMYKRDGLALTLSNDVQG 410
           DT+++ E+ E A      G   +V D FP E     A   +KL   RD  A    +D   
Sbjct: 87  DTQERKEITEKAQLTIFYGGSVVVFDDFPAE----KAGELMKLAGSRDSTAAAAVSDAGA 142

Query: 411 DDGRPAYGD 437
             G+P   D
Sbjct: 143 AAGQPCLPD 151


>03_01_0300 + 2350232-2352274,2352349-2352669,2352752-2352838,
            2353031-2353708,2353800-2353964,2354139-2354433,
            2354581-2354795,2354885-2355190,2355269-2355332,
            2355426-2355665,2355783-2355886
          Length = 1505

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 13/53 (24%), Positives = 26/53 (49%)
 Frame = +2

Query: 2    LGNTQDSTLQR*SPL*LFYVFSWHLCMLQIPTSLTTFWRSSFTIASSSPITTV 160
            LG    +T+Q    + +    +W + +L +P ++   W   + IASS  +T +
Sbjct: 1059 LGGFASTTIQLLGIVAVMSKVTWQVLILIVPMAVACMWMQRYYIASSRELTRI 1111


>12_01_0378 - 2946916-2947590
          Length = 224

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 14/47 (29%), Positives = 27/47 (57%)
 Frame = +1

Query: 16  GLDAPKMKPAIVILCLFVASLYAADSDVPNDILEEQLYNSVVVADYD 156
           G+    ++P +++L    ASL AA++ VP    + ++  +VV  D+D
Sbjct: 87  GVHYDAIRPRLLLLLAGGASLGAANATVPGVFHQPRMSTTVVAIDFD 133


>02_05_0366 -
           28313190-28313601,28313759-28314225,28315044-28315782,
           28316548-28316615,28316693-28316757,28316922-28320162,
           28320239-28320301,28320756-28320824,28321020-28321055,
           28322035-28322280,28322531-28322569,28322695-28322816,
           28322921-28323004,28323100-28323235,28323486-28323535,
           28323620-28323756,28323863-28323951,28324847-28324954,
           28325080-28325163,28325841-28325888,28326036-28326153,
           28328262-28328347
          Length = 2168

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 16/53 (30%), Positives = 27/53 (50%)
 Frame = +1

Query: 127 YNSVVVADYDSAVEKSKHLYEEKKSEVITNVVNKLIRNNKMN*WSTPINFGSR 285
           Y  V +  Y   ++ SK +++ KK + +      LI+N K   W T +NF S+
Sbjct: 767 YFHVCITTYRLVIQDSK-VFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSK 818


>06_03_0095 -
           16575938-16576585,16577028-16577219,16577294-16577392,
           16577496-16577618,16577717-16577929,16578143-16578251,
           16578339-16578427,16578604-16578880,16578974-16579084,
           16579160-16580508,16581218-16581631
          Length = 1207

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 22/74 (29%), Positives = 34/74 (45%)
 Frame = -2

Query: 410 ALNIIAQRQSETVALVHKLNRVFGEDKSELNWETIPDDVLGALEPKLIGVLHQFILLFRI 231
           +L +IA   S    +  K + + GE K    W   PDD     +PK   +   F LL  +
Sbjct: 316 SLLVIALLGSVLFGIWTKEDLMNGEMK---RWYLRPDDSTIFYDPKRAALASFFHLLTAL 372

Query: 230 SLFTTFVMTSLFFS 189
            L++ F+  SL+ S
Sbjct: 373 MLYSYFIPISLYIS 386


>03_06_0460 -
           34098115-34098622,34098981-34099355,34100939-34101156,
           34101235-34101297
          Length = 387

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = -2

Query: 104 LGTSESAAYRDATKRHRITIAGFIFGAS 21
           +G +++A+Y  +T R  + +AG + GAS
Sbjct: 284 VGAADAASYCGSTSRRMVQVAGEVLGAS 311


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,010,813
Number of Sequences: 37544
Number of extensions: 261216
Number of successful extensions: 827
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 818
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 827
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1317005676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)