Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20295
         (570 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28123| Best HMM Match : zf-NF-X1 (HMM E-Value=0.24)                 29   2.0  
SB_41668| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_17366| Best HMM Match : Filament (HMM E-Value=0.14)                 28   6.2  

>SB_28123| Best HMM Match : zf-NF-X1 (HMM E-Value=0.24)
          Length = 453

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 14/46 (30%), Positives = 26/46 (56%)
 Frame = +1

Query: 193 KKSEVITNVVNKLIRNNKMN*WSTPINFGSRAPRTSSGIVSQLSSD 330
           K+  ++TN+ +  I  N++N +   INF  R     S + +++SSD
Sbjct: 214 KEKMILTNLKSPRITANQLNVYKNQINFLKRMFELQSALEAEVSSD 259


>SB_41668| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 588

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 18/44 (40%), Positives = 24/44 (54%)
 Frame = +2

Query: 86  QIPTSLTTFWRSSFTIASSSPITTVRLKRASIYTRRRRAKSSQM 217
           +IPTS     R SFTI    P + VR  R S +T  RR  +S++
Sbjct: 403 RIPTSRVRQTRLSFTIVRRIPTSRVRQTRLS-FTMIRRIPASRV 445


>SB_17366| Best HMM Match : Filament (HMM E-Value=0.14)
          Length = 306

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 27/111 (24%), Positives = 45/111 (40%), Gaps = 7/111 (6%)
 Frame = +1

Query: 73  SLYAADSDVPNDILEEQLYNSVVVADYDSAVEKS---KHLYEEKKSEVITNVVN-KLIRN 240
           +L   D D     + E     +++   +S +E +   K+    +  E+    +N KLI  
Sbjct: 22  NLLEHDKDAMESTMSELREEVILLRKENSQIESTFVEKNAELRQHFEIEKEELNRKLIHE 81

Query: 241 NKMN*WSTPINFGSR---APRTSSGIVSQLSSDLSSPKTRLSLCTSATVSL 384
            +   +S    F  +      T SG++ QL  DL   KTR     SA + L
Sbjct: 82  KEELRYSLEAEFSQKFVNESATQSGVIQQLDGDLRMMKTRCGELESAMLEL 132


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,100,674
Number of Sequences: 59808
Number of extensions: 305631
Number of successful extensions: 902
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 852
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 902
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1349364063
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)