Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20295
(570 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g60170.1 68414.m06778 pre-mRNA processing ribonucleoprotein b... 33 0.10
At1g76730.1 68414.m08930 5-formyltetrahydrofolate cyclo-ligase f... 31 0.72
At1g04120.1 68414.m00401 ABC transporter family protein Strong s... 29 2.9
At5g39510.1 68418.m04784 vesicle transport v-SNARE 11 (VTI11) / ... 28 3.8
At2g18860.1 68415.m02198 syntaxin family protein similar to Synt... 28 5.0
At3g12810.1 68416.m01598 SNF2 domain-containing protein / helica... 27 6.7
At3g06620.1 68416.m00769 protein kinase family protein contains ... 27 6.7
At1g59453.1 68414.m06679 transcription factor-related weak simil... 27 6.7
At1g59077.1 68414.m06670 hypothetical protein 27 6.7
At1g58766.1 68414.m06659 hypothetical protein 27 6.7
At2g04620.1 68415.m00470 cation efflux family protein potential ... 27 8.8
>At1g60170.1 68414.m06778 pre-mRNA processing ribonucleoprotein
binding region-containing protein similar to U4/U6
snRNP-associated 61 kDa protein [Homo sapiens]
GI:18249847; contains Pfam profile PF01798: Putative
snoRNA binding domain
Length = 485
Score = 33.5 bits (73), Expect = 0.10
Identities = 18/67 (26%), Positives = 32/67 (47%)
Frame = +1
Query: 19 LDAPKMKPAIVILCLFVASLYAADSDVPNDILEEQLYNSVVVADYDSAVEKSKHLYEEKK 198
+D + P+ +I+ + V +L S +P D+L++ L D DSA +K E K
Sbjct: 154 VDLADLLPSAIIMVVSVTALTTKGSALPEDVLQKVLEACDRALDLDSARKKVLEFVESKM 213
Query: 199 SEVITNV 219
+ N+
Sbjct: 214 GSIAPNL 220
>At1g76730.1 68414.m08930 5-formyltetrahydrofolate cyclo-ligase
family protein contains Pfam profile PF01812
5-formyltetrahydrofolate cyclo-ligase
Length = 354
Score = 30.7 bits (66), Expect = 0.72
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +1
Query: 289 PRTSSGIVSQLSSDLSSPKTRLSLCTSATVS 381
PR +G S L SDL P+T + CTS V+
Sbjct: 171 PRLRTGFFSVLESDLLKPETIMEACTSVGVA 201
>At1g04120.1 68414.m00401 ABC transporter family protein Strong
similarity to MRP-like ABC transporter gb|U92650 from A.
thaliana and canalicular multi-drug resistance protein
gb|L49379 from Rattus norvegicus
Length = 1514
Score = 28.7 bits (61), Expect = 2.9
Identities = 12/53 (22%), Positives = 26/53 (49%)
Frame = +2
Query: 2 LGNTQDSTLQR*SPL*LFYVFSWHLCMLQIPTSLTTFWRSSFTIASSSPITTV 160
LG +T+Q + + +W + +L +P ++ FW + +ASS + +
Sbjct: 1065 LGGFASTTIQLCGIVAVMTNVTWQVFLLVVPVAVACFWMQKYYMASSRELVRI 1117
>At5g39510.1 68418.m04784 vesicle transport v-SNARE 11 (VTI11) /
vesicle soluble NSF attachment protein receptor VTI1a
(VTI1A) identical to SP|Q9SEL6 Vesicle transport v-SNARE
11 (AtVTI11) (Vesicle transport v-SNARE protein VTI1a)
(Vesicle soluble NSF attachment protein receptor VTI1a)
(AtVTI1a) {Arabidopsis thaliana}
Length = 221
Score = 28.3 bits (60), Expect = 3.8
Identities = 33/117 (28%), Positives = 55/117 (47%), Gaps = 3/117 (2%)
Frame = +1
Query: 157 SAVEKSKHLYEEKKSEVITNVVNKLIRNNKMN*WSTPINFGSRAPRTSSGIVSQL---SS 327
SA+ ++K SE+ + + N + KM+ + + P S ++ +L S
Sbjct: 25 SAISLDGEQKKQKLSEIKSGLENAEVLIRKMD-----LEARTLPPNLKSSLLVKLREFKS 79
Query: 328 DLSSPKTRLSLCTSATVSL*R*AMMFKATMADLPTATARTRQARESAGS*SLCGRTT 498
DL++ KT + TS ++ + +A MAD TA+A R AR + L GRTT
Sbjct: 80 DLNNFKTEVKRITSGQLNAAARDELLEAGMADTKTASADQR-ARLMMSTERL-GRTT 134
>At2g18860.1 68415.m02198 syntaxin family protein similar to
Syntaxin 61 (AtSYP61) (Osmotic stess-sensitive mutant 1)
(Swiss-Prot:Q946Y7) [Arabidopsis thaliana]
Length = 296
Score = 27.9 bits (59), Expect = 5.0
Identities = 16/54 (29%), Positives = 32/54 (59%), Gaps = 5/54 (9%)
Frame = +3
Query: 231 DTKQQDELMEYAYQLWLQGSKD-IVRD----CFPVEFRLIFAENAIKLMYKRDG 377
+ ++ ++ME AY+LW++ KD I ++ +++L E A++L +KR G
Sbjct: 21 EVQKSTDIMESAYRLWIREKKDEICKELQAALGTAKWQLEEFEKAVRLSHKRCG 74
>At3g12810.1 68416.m01598 SNF2 domain-containing protein / helicase
domain-containing protein similar to transcriptional
activator SRCAP [Homo sapiens] GI:5106572; contains Pfam
profiles PF00271: Helicase conserved C-terminal domain,
PF00176: SNF2 family N-terminal domain
Length = 2055
Score = 27.5 bits (58), Expect = 6.7
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = +1
Query: 136 VVVADYDSAVEKSKHLYEEKKSEVITNVVNKLIRNNKMN*WSTPINFGSR 285
V + Y ++ SK +++ KK + + LI+N K W T +NF S+
Sbjct: 638 VCITTYRLVIQDSK-MFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSK 686
>At3g06620.1 68416.m00769 protein kinase family protein contains
Pfam domain, PF00069: Protein kinase domain
Length = 773
Score = 27.5 bits (58), Expect = 6.7
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +1
Query: 223 NKLIRNNKMN*WSTPINFGSRAPRTSSGIVS 315
NK I N + WS+PIN S + +S G S
Sbjct: 441 NKPINNEASSLWSSPINANSTSSASSCGSTS 471
>At1g59453.1 68414.m06679 transcription factor-related weak similarity
to TFIIIC Box B-binding subunit [Homo sapiens] GI:442362
Length = 1729
Score = 27.5 bits (58), Expect = 6.7
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +1
Query: 112 LEEQLYNSVVVADYDSAVEKSKHLYEEKKSEV-ITNV 219
LEE N VV +DY ++ +K H+ E +V I N+
Sbjct: 1545 LEEHRSNDVVTSDYSTSKDKQVHVSENSVHKVTILNI 1581
>At1g59077.1 68414.m06670 hypothetical protein
Length = 665
Score = 27.5 bits (58), Expect = 6.7
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +1
Query: 112 LEEQLYNSVVVADYDSAVEKSKHLYEEKKSEV-ITNV 219
LEE N VV +DY ++ +K H+ E +V I N+
Sbjct: 481 LEEHRSNDVVTSDYSTSKDKQVHVSENSVHKVTILNI 517
>At1g58766.1 68414.m06659 hypothetical protein
Length = 665
Score = 27.5 bits (58), Expect = 6.7
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +1
Query: 112 LEEQLYNSVVVADYDSAVEKSKHLYEEKKSEV-ITNV 219
LEE N VV +DY ++ +K H+ E +V I N+
Sbjct: 481 LEEHRSNDVVTSDYSTSKDKQVHVSENSVHKVTILNI 517
>At2g04620.1 68415.m00470 cation efflux family protein potential
member of the cation diffusion facilitator (CDF) family,
or cation efflux (CE) family, see PMID:11500563
Length = 798
Score = 27.1 bits (57), Expect = 8.8
Identities = 9/21 (42%), Positives = 16/21 (76%)
Frame = -1
Query: 129 VKLLLQNVVRDVGICSIQRCH 67
+K ++N+++ G+CSIQR H
Sbjct: 727 LKEAMRNILKTKGVCSIQRLH 747
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,220,652
Number of Sequences: 28952
Number of extensions: 209017
Number of successful extensions: 809
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 793
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 809
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1102220672
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -