Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20294
         (406 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4 |S...    27   1.1  
SPAC4G9.02 |||ribonuclease H2 complex subunit|Schizosaccharomyce...    25   3.4  
SPAC1B3.18c |mrps18||mitochondrial ribosomal protein subunit S18...    25   3.4  
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    25   4.5  
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces...    25   5.9  
SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subuni...    24   7.8  
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    24   7.8  

>SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 690

 Score = 27.1 bits (57), Expect = 1.1
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 172 GPPPQDRPGWRRAVRSSRSQLNVTQTTSV 258
           GPPP +R GW + V      +N   +TSV
Sbjct: 289 GPPPPER-GWEKLVSDDDDDVNDNVSTSV 316


>SPAC4G9.02 |||ribonuclease H2 complex subunit|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 326

 Score = 25.4 bits (53), Expect = 3.4
 Identities = 13/49 (26%), Positives = 22/49 (44%)
 Frame = +2

Query: 254 VLDLCQRCAKLTKSKLAYPACCSKDLKARKWCSDYVXFGRGCDY*SVNV 400
           ++ L   CAK+T+       C  + ++   W S Y    R  ++  VNV
Sbjct: 213 IVSLASICAKVTRD--IQLECARESIRTENWGSGYSSDARTTEWLKVNV 259


>SPAC1B3.18c |mrps18||mitochondrial ribosomal protein subunit
           S18|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 223

 Score = 25.4 bits (53), Expect = 3.4
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = -2

Query: 180 WRSEPVRYKGTAPSKTLSSSIKRTVTP--FSQANE 82
           W   P R    AP K LSS ++ T+TP  FS+  E
Sbjct: 59  WSQSPRR---NAPKKELSSLLESTITPKAFSKRTE 90


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
           subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = +1

Query: 61  LIRVCFYFVCLRKWRYSSFYGGT*CF*WRCSF 156
           +++VC YF+C  +     F     CF + C++
Sbjct: 187 MVQVCLYFLCWGEANNVRFVPECLCFIFECAY 218


>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 24.6 bits (51), Expect = 5.9
 Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 9/88 (10%)
 Frame = +2

Query: 74  VFISFA*ENGVTVRFMEELNVFD----GAVPLYRTGSDRHLKTALVGAGQ---SDLHGVS 232
           VF  +  + G T    + L +F     G  PLYRT  ++ +KT  V       +  HGV+
Sbjct: 237 VFFLYLHDYGSTPEDFDSLRIFARYLVGFAPLYRTDDEKVIKTLNVTRLPHLVAIRHGVA 296

Query: 233 *MSHRRRVLDLCQRCAKLTK--SKLAYP 310
             S+  R +   +   +L K  S L YP
Sbjct: 297 -FSYSERSVSAMRNTFQLIKWASLLKYP 323


>SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subunit
           Orc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 707

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 8/17 (47%), Positives = 14/17 (82%)
 Frame = +2

Query: 248 RRVLDLCQRCAKLTKSK 298
           RR LD+C+R ++L ++K
Sbjct: 557 RRALDICRRASELAENK 573


>SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1588

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +2

Query: 287  TKSKLAYPACCSKDLKARKW 346
            T S  A P CCSK+ K   W
Sbjct: 1493 TLSNYACPDCCSKEGKLYPW 1512


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,492,247
Number of Sequences: 5004
Number of extensions: 27243
Number of successful extensions: 105
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 138190552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)