Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20294
         (406 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0651 + 5622786-5624165,5624720-5624881,5624984-5625173,562...    29   1.1  
06_03_1188 + 28269231-28270358                                         28   2.4  
05_01_0054 + 379974-380215,380343-380556,381603-381892,382384-38...    27   4.3  
01_06_0388 + 28927211-28928467                                         27   4.3  
04_01_0151 - 1751828-1751911,1754565-1755578                           27   5.6  
06_03_0256 - 18841627-18841993,18842087-18842415,18842512-188427...    27   7.5  
11_04_0355 + 16705281-16706006                                         26   9.9  
02_02_0586 - 11861509-11861637,11863651-11863815,11864738-118648...    26   9.9  
01_06_0385 + 28914888-28916342                                         26   9.9  

>08_01_0651 +
           5622786-5624165,5624720-5624881,5624984-5625173,
           5625253-5625284
          Length = 587

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 18/57 (31%), Positives = 26/57 (45%)
 Frame = +3

Query: 114 VLWRNLMFLMALFLCIALVRTATSRPPWLAPGSQIFTESAECHTDDECWIYARDAPS 284
           VL R    L A   C+ ++ T+  +PP +    +    SA C   D  W   R+APS
Sbjct: 107 VLSRRWRHLWASAPCVDILLTSDRQPPPMNRRMRHHRASAPCPCADVLWTRDRNAPS 163


>06_03_1188 + 28269231-28270358
          Length = 375

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +3

Query: 177 ATSRPPWLAPGSQIFTESAECHTDDECWIYARDAP 281
           A S PP +  G  +  E  EC  ++E   YA DAP
Sbjct: 14  AVSVPPVMVDGETVPKEVEECEDEEEEEEYAGDAP 48


>05_01_0054 +
           379974-380215,380343-380556,381603-381892,382384-382560,
           382705-383481,383572-383645,383757-383819,383919-384007,
           384106-384201,384319-384978,385613-385687,386422-386492,
           386578-386635,386900-387104,387379-387869
          Length = 1193

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = -1

Query: 205 GANQGGLEVAVRTSAIQRNSAIKNIKFLHKTNCNAIFSGKRNKNTRESSIINNK 44
           GA +     A+R  A   NS+    K +  +  +    G+ N +TR+S ++NN+
Sbjct: 117 GAEKPSGSGALRIGAQNSNSSAVMSKRVRSSLADGRLEGRSNISTRQSPLVNNE 170


>01_06_0388 + 28927211-28928467
          Length = 418

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
 Frame = +3

Query: 120 WRNLMFLMALFLCIA--LVRTATSRPPWLAPGSQIFTESAECHTDDE 254
           W +   L   FL  A   V+T  + P W++P S +     E  TDDE
Sbjct: 247 WTSSQLLEHPFLASAGCSVKTGEAAPQWVSPKSTLDVAFWESDTDDE 293


>04_01_0151 - 1751828-1751911,1754565-1755578
          Length = 365

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +3

Query: 114 VLWRNLMFLMALFLCIALVRTATSR 188
           +L   L+ ++ LFLC+A+ R  TSR
Sbjct: 2   MLLLTLLLVLTLFLCLAVFRRTTSR 26


>06_03_0256 -
           18841627-18841993,18842087-18842415,18842512-18842749,
           18844091-18844373,18844773-18844989,18845067-18845360
          Length = 575

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 15/45 (33%), Positives = 17/45 (37%)
 Frame = +3

Query: 255 CWIYARDAPSLPNQS*PIRLAARKILRRGNGVRTTXTSVEAVTTD 389
           CW   RD P+  +   PI     K  R G G R     V    TD
Sbjct: 445 CWNILRDQPNPEDIKRPIGTKTAKAQRNGKGRRKRKAKVYLSDTD 489


>11_04_0355 + 16705281-16706006
          Length = 241

 Score = 26.2 bits (55), Expect = 9.9
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +1

Query: 124 GT*CF*WRCSFVSHWFGPPPQDRPGWRRAVRSSRSQLN 237
           G  CF    ++ S W G P +DR    RA+ +    L+
Sbjct: 89  GCGCFGCYTAYWSRWDGSPERDRDAIHRAIEAFEDHLS 126


>02_02_0586 -
           11861509-11861637,11863651-11863815,11864738-11864846,
           11864971-11865065,11865169-11865702,11866299-11866499,
           11867826-11868090,11868111-11868736
          Length = 707

 Score = 26.2 bits (55), Expect = 9.9
 Identities = 14/38 (36%), Positives = 17/38 (44%), Gaps = 4/38 (10%)
 Frame = +3

Query: 159 IALVRTATSRPPWLAPGSQIFTESAE----CHTDDECW 260
           IA  RT T+ PPW A  + + T   E        D CW
Sbjct: 170 IAKARTCTAMPPWPASLATLITAKTESLMAAAAMDGCW 207


>01_06_0385 + 28914888-28916342
          Length = 484

 Score = 26.2 bits (55), Expect = 9.9
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 168 VRTATSRPPWLAPGSQIFTESAECHTDDE 254
           V+ A  +P W++P S +     E  TDDE
Sbjct: 264 VKAAQPKPRWVSPKSTLDAAFWESETDDE 292


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,005,444
Number of Sequences: 37544
Number of extensions: 195425
Number of successful extensions: 580
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 580
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 706675332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)