Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20294
         (406 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47014| Best HMM Match : rve (HMM E-Value=6.8e-21)                   29   1.4  
SB_18201| Best HMM Match : rve (HMM E-Value=3.6e-21)                   29   1.4  
SB_144| Best HMM Match : rve (HMM E-Value=3.6e-21)                     29   1.4  
SB_45793| Best HMM Match : rve (HMM E-Value=0.011)                     29   1.4  
SB_21960| Best HMM Match : rve (HMM E-Value=4e-23)                     29   1.4  
SB_7045| Best HMM Match : rve (HMM E-Value=3.8e-22)                    29   1.4  
SB_36850| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.5  
SB_22527| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.5  
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   3.3  
SB_47088| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.4  
SB_12273| Best HMM Match : fn3 (HMM E-Value=0.021)                     27   4.4  
SB_11299| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.4  
SB_37417| Best HMM Match : rve (HMM E-Value=0.27)                      27   5.8  
SB_10317| Best HMM Match : rve (HMM E-Value=8e-07)                     27   5.8  
SB_56248| Best HMM Match : RVT_1 (HMM E-Value=8.6e-20)                 27   5.8  
SB_20574| Best HMM Match : Extensin_2 (HMM E-Value=0.25)               27   5.8  
SB_51974| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.7  
SB_21701| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.7  
SB_42045| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.7  

>SB_47014| Best HMM Match : rve (HMM E-Value=6.8e-21)
          Length = 752

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = -2

Query: 195 RAVLRWRSEPVRYKGTAPSKTLSSSIKRTVTPFSQA 88
           +++L WR+ P     ++P++ L S   R++ P SQA
Sbjct: 692 KSLLEWRNSPTPGTSSSPAQRLMSRRTRSMLPCSQA 727


>SB_18201| Best HMM Match : rve (HMM E-Value=3.6e-21)
          Length = 322

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = -2

Query: 195 RAVLRWRSEPVRYKGTAPSKTLSSSIKRTVTPFSQA 88
           +++L WR+ P     ++P++ L S   R++ P SQA
Sbjct: 205 KSLLEWRNSPTPGTSSSPAQRLMSRRTRSMLPCSQA 240


>SB_144| Best HMM Match : rve (HMM E-Value=3.6e-21)
          Length = 887

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = -2

Query: 195 RAVLRWRSEPVRYKGTAPSKTLSSSIKRTVTPFSQA 88
           +++L WR+ P     ++P++ L S   R++ P SQA
Sbjct: 770 KSLLEWRNSPTPGTSSSPAQRLMSRRTRSMLPCSQA 805


>SB_45793| Best HMM Match : rve (HMM E-Value=0.011)
          Length = 254

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = -2

Query: 195 RAVLRWRSEPVRYKGTAPSKTLSSSIKRTVTPFSQA 88
           +++L WR+ P     ++P++ L S   R++ P SQA
Sbjct: 116 KSLLEWRNSPTPGTSSSPAQRLMSRRTRSMLPCSQA 151


>SB_21960| Best HMM Match : rve (HMM E-Value=4e-23)
          Length = 1109

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = -2

Query: 195  RAVLRWRSEPVRYKGTAPSKTLSSSIKRTVTPFSQA 88
            +++L WR+ P     ++P++ L S   R++ P SQA
Sbjct: 904  KSLLEWRNSPTPGTSSSPAQRLMSRRTRSMLPCSQA 939


>SB_7045| Best HMM Match : rve (HMM E-Value=3.8e-22)
          Length = 1213

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = -2

Query: 195  RAVLRWRSEPVRYKGTAPSKTLSSSIKRTVTPFSQA 88
            +++L WR+ P     ++P++ L S   R++ P SQA
Sbjct: 1008 KSLLEWRNSPTPGTSSSPAQRLMSRRTRSMLPCSQA 1043


>SB_36850| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1008

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -1

Query: 88  KRNKNTRESSIINNKXIRICMFGLRIYK 5
           K+N      S+ NN  I+IC+FG ++ K
Sbjct: 72  KKNIRLYHVSLTNNNNIKICLFGFQLAK 99


>SB_22527| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1048

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = -2

Query: 219 RSDCPAPTRAVLRWRSEPVRYKGTAPSKTLSSSIKRTVT 103
           RSD PAP R V+R R+  +RY G      +++   +T+T
Sbjct: 466 RSDAPAPERYVVRVRN--LRYLGNPKHVAVAAKENKTLT 502


>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2670

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 15/48 (31%), Positives = 21/48 (43%)
 Frame = +3

Query: 72  VFLFRLPEKMALQFVLWRNLMFLMALFLCIALVRTATSRPPWLAPGSQ 215
           +F F       + ++ W N     A F     +  A  RPPW APG+Q
Sbjct: 511 IFTFEF-STFTVGYLPWNNHHLYRAAFAPSKFLHAA--RPPWFAPGTQ 555


>SB_47088| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 259

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 12/38 (31%), Positives = 16/38 (42%)
 Frame = +2

Query: 269 QRCAKLTKSKLAYPACCSKDLKARKWCSDYVXFGRGCD 382
           Q C K +     Y  CC      R +C+ Y  + R CD
Sbjct: 38  QDCLKTSTEN--YVNCCEGKCSRRAYCNGYCVYDRHCD 73


>SB_12273| Best HMM Match : fn3 (HMM E-Value=0.021)
          Length = 317

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +2

Query: 236 MSHRRRVLDLCQRCAKLTKSKLAYPACCSKDLKARKWCSDYVXFG 370
           MS+   ++ LC++CA    +  A   CC    +AR      V FG
Sbjct: 1   MSNSYVIMSLCRQCASGLSASNAGFCCCHHSRRARHEIGVQVLFG 45


>SB_11299| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3762

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +1

Query: 175  PPPQDRPGWRRAVRSSRSQLNVTQTTSV 258
            PPP   PG    VR     L+ TQ+T V
Sbjct: 3511 PPPLQSPGDSEKVRQESKSLSATQSTQV 3538


>SB_37417| Best HMM Match : rve (HMM E-Value=0.27)
          Length = 354

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 184 QDRPGWRRAVRSSRSQLNVTQTTSVGFMPE 273
           +D+P W  A+    S +N T+T   GF P+
Sbjct: 110 RDKPQWVTALPIVISDMNATKTRMTGFAPK 139


>SB_10317| Best HMM Match : rve (HMM E-Value=8e-07)
          Length = 195

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -2

Query: 192 AVLRWRSEPVRYKGTAPSKTLSSSIKRTVTPFS 94
           A+L WR+ P    GT+P++ L     +T+ P +
Sbjct: 127 ALLNWRNTPTEGIGTSPAQRLMGRRCKTLLPIA 159


>SB_56248| Best HMM Match : RVT_1 (HMM E-Value=8.6e-20)
          Length = 1193

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = -2

Query: 192  AVLRWRSEPVRYKGTAPSKTLSSSIKRTVTPFS 94
            A+L WR++P    GT+P++ L     +T+ P +
Sbjct: 997  ALLNWRNKPTDGIGTSPAQLLMGRRCKTLLPIA 1029


>SB_20574| Best HMM Match : Extensin_2 (HMM E-Value=0.25)
          Length = 1508

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = -1

Query: 187 LEVAVRTSAIQRNSAIKNIKFLHKTNCNAIFSGKR 83
           +EVAVR      +  I+N++F+H    ++ FS K+
Sbjct: 206 VEVAVRDPGSWSSIKIENLEFVHNDKLSSEFSAKK 240


>SB_51974| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3474

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = +3

Query: 96   KMALQFVLWRNLMFLMALFLCIALVRTATSRPPWLAP-GSQIFTESAE 236
            +M  +   W   + +   +LCI LV    SR  W+ P  S +F  +A+
Sbjct: 2546 RMKQEMFAWVKEVVIFVGYLCILLVVAHGSRSQWMHPIKSSLFQTTAD 2593


>SB_21701| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1906

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = -1

Query: 169  TSAIQRNSAIKNIKFLHKTNCNAIFSGKRNKNTRESSIINN 47
            +S I  NS+I N       N ++I +   + N   SSI NN
Sbjct: 1795 SSIINNNSSINNNNSSINNNNSSIINNNSSNNNNNSSINNN 1835


>SB_42045| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 356

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 17/47 (36%), Positives = 19/47 (40%), Gaps = 3/47 (6%)
 Frame = +2

Query: 275 CAKLTKSKLAYPACCS---KDLKARKWCSDYVXFGRGCDY*SVNV*W 406
           C  + K    Y AC S   K L  R  C   V + R C    VNV W
Sbjct: 263 CHPVVKPHKYYKACISEVCKCLVKRCECESLVTYARACRRMGVNVNW 309


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,489,020
Number of Sequences: 59808
Number of extensions: 226252
Number of successful extensions: 634
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 634
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 727815563
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)