Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20294
         (406 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC047919-1|AAH47919.1|  159|Homo sapiens chromosome 6 open readi...    29   7.8  
BC023627-1|AAH23627.1|  159|Homo sapiens chromosome 6 open readi...    29   7.8  

>BC047919-1|AAH47919.1|  159|Homo sapiens chromosome 6 open reading
           frame 1 protein.
          Length = 159

 Score = 28.7 bits (61), Expect = 7.8
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
 Frame = +3

Query: 156 CIALVRTAT---SRPPWLAPGSQIFTESAECHTDDECWIYARDAPSLPNQS*P 305
           C+ L R+ +     P W   G ++ T ++ CH    CW+  RD   LP+ S P
Sbjct: 27  CMRLSRSCSLTWETPRWYMAG-RVATSTSGCH----CWMSRRDLTPLPHPSEP 74


>BC023627-1|AAH23627.1|  159|Homo sapiens chromosome 6 open reading
           frame 1 protein.
          Length = 159

 Score = 28.7 bits (61), Expect = 7.8
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
 Frame = +3

Query: 156 CIALVRTAT---SRPPWLAPGSQIFTESAECHTDDECWIYARDAPSLPNQS*P 305
           C+ L R+ +     P W   G ++ T ++ CH    CW+  RD   LP+ S P
Sbjct: 27  CMRLSRSCSLTWETPRWYMAG-RVATSTSGCH----CWMSRRDLTPLPHPSEP 74


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 52,803,608
Number of Sequences: 237096
Number of extensions: 997861
Number of successful extensions: 2653
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2593
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2653
length of database: 76,859,062
effective HSP length: 82
effective length of database: 57,417,190
effective search space used: 2985693880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)