Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20294
         (406 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23168-4|AAU87833.1| 1379|Caenorhabditis elegans Temporarily ass...    29   1.7  
U23168-3|AAU87831.1| 4034|Caenorhabditis elegans Temporarily ass...    29   1.7  
U23168-2|AAC38806.2| 1633|Caenorhabditis elegans Temporarily ass...    29   1.7  
U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily ass...    29   1.7  
AC024817-45|AAF59574.3|  432|Caenorhabditis elegans Hypothetical...    28   2.9  
Z81127-4|CAB03389.1|  344|Caenorhabditis elegans Hypothetical pr...    27   6.8  
Z70680-1|CAA94571.1|  221|Caenorhabditis elegans Hypothetical pr...    27   6.8  
Z69902-1|CAA93767.1|  689|Caenorhabditis elegans Hypothetical pr...    27   6.8  
Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical pr...    26   9.0  
Z54281-2|CAA91045.3|  399|Caenorhabditis elegans Hypothetical pr...    26   9.0  
AL161712-12|CAC70144.1|  789|Caenorhabditis elegans Hypothetical...    26   9.0  
AL031630-15|CAA20994.1|  244|Caenorhabditis elegans Hypothetical...    26   9.0  
AC084152-9|AAK39313.1|  296|Caenorhabditis elegans Hypothetical ...    26   9.0  

>U23168-4|AAU87833.1| 1379|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 308, isoform d protein.
          Length = 1379

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -2

Query: 168 PVRYKGTAPSKTLSSSIKRTVTPFSQANEIKTHANQV 58
           P+R  G+ P    S+S K  VT  S+  +IK H  Q+
Sbjct: 289 PLRGSGSPPPPDPSTSTKVAVTSASEVKKIKDHKKQL 325


>U23168-3|AAU87831.1| 4034|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 308, isoform b protein.
          Length = 4034

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -2

Query: 168 PVRYKGTAPSKTLSSSIKRTVTPFSQANEIKTHANQV 58
           P+R  G+ P    S+S K  VT  S+  +IK H  Q+
Sbjct: 289 PLRGSGSPPPPDPSTSTKVAVTSASEVKKIKDHKKQL 325


>U23168-2|AAC38806.2| 1633|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 308, isoform a protein.
          Length = 1633

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -2

Query: 168 PVRYKGTAPSKTLSSSIKRTVTPFSQANEIKTHANQV 58
           P+R  G+ P    S+S K  VT  S+  +IK H  Q+
Sbjct: 289 PLRGSGSPPPPDPSTSTKVAVTSASEVKKIKDHKKQL 325


>U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 308, isoform c protein.
          Length = 7548

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -2

Query: 168 PVRYKGTAPSKTLSSSIKRTVTPFSQANEIKTHANQV 58
           P+R  G+ P    S+S K  VT  S+  +IK H  Q+
Sbjct: 289 PLRGSGSPPPPDPSTSTKVAVTSASEVKKIKDHKKQL 325


>AC024817-45|AAF59574.3|  432|Caenorhabditis elegans Hypothetical
           protein Y54G2A.4 protein.
          Length = 432

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = +3

Query: 78  LFRLPEKMALQFVLWRNLMFLMALFLCIALVRTAT 182
           LFR+P  + + F+LW+N   +     C+  +  A+
Sbjct: 369 LFRVPLNLIVIFILWQNFTMISIFKFCVFFLFAAS 403


>Z81127-4|CAB03389.1|  344|Caenorhabditis elegans Hypothetical
           protein T22G5.4 protein.
          Length = 344

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +3

Query: 75  FLFRLPEKMALQFVLWRNLMFLMALFLCIALV 170
           FL+ +P  +A+ F  W  L   MAL LC  ++
Sbjct: 75  FLYNIPYSLAIMFQSW--LFLSMALDLCFCIM 104


>Z70680-1|CAA94571.1|  221|Caenorhabditis elegans Hypothetical
           protein C25G4.2 protein.
          Length = 221

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 16/52 (30%), Positives = 23/52 (44%)
 Frame = +2

Query: 74  VFISFA*ENGVTVRFMEELNVFDGAVPLYRTGSDRHLKTALVGAGQSDLHGV 229
           V + F       V+F+EE   FDG +   +  S  HL  A    G+  L G+
Sbjct: 78  VAVGFEESVAAVVKFIEENGPFDGLLGFSQGASMVHLLIAKAQLGEIKLPGI 129


>Z69902-1|CAA93767.1|  689|Caenorhabditis elegans Hypothetical
           protein C47D12.2 protein.
          Length = 689

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -1

Query: 193 GGLEVAVRTSAIQRNSAIKNIKFLHKTNCNA 101
           GGL   V   AIQ+N+     ++LH TNC A
Sbjct: 459 GGLTTLVLVRAIQKNALKTRDRYLH-TNCLA 488


>Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical
           protein F28D9.1 protein.
          Length = 601

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -2

Query: 207 PAPTRAVLRWRSEPVRYKGTAPSKTLSSSIKRTVTP 100
           PAP RA  R +S P   +  +PS++ S + +R  +P
Sbjct: 422 PAPKRAKSRSKSPPAPRRRRSPSQSKSPAPRRRRSP 457


>Z54281-2|CAA91045.3|  399|Caenorhabditis elegans Hypothetical
           protein F46C5.3 protein.
          Length = 399

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +2

Query: 101 GVTVRFMEELNVFDGAVPLYRTGSD 175
           G+T+  +  L V D A+P YRT S+
Sbjct: 6   GITICLVAFLTVIDCAIPYYRTHSN 30


>AL161712-12|CAC70144.1|  789|Caenorhabditis elegans Hypothetical
           protein Y66D12A.15 protein.
          Length = 789

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +3

Query: 180 TSRPPWLAPGSQIFTES 230
           T+RP W+AP   IF ES
Sbjct: 72  TARPLWVAPDGHIFLES 88


>AL031630-15|CAA20994.1|  244|Caenorhabditis elegans Hypothetical
           protein Y38H6C.16 protein.
          Length = 244

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 120 WRNLMFLMALFLCIALVRTATSRPPWLAP 206
           W+ L F + LFL I  + ++  RPP L P
Sbjct: 35  WKILFFGIFLFLTIIKLASSMPRPPVLPP 63


>AC084152-9|AAK39313.1|  296|Caenorhabditis elegans Hypothetical
           protein Y102A11A.1 protein.
          Length = 296

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 20/57 (35%), Positives = 24/57 (42%), Gaps = 7/57 (12%)
 Frame = +1

Query: 79  YFVCLRKWRYSSFYGGT--*CF*WRCSFVSHWFGPP---PQDRPGWR--RAVRSSRS 228
           Y  C  K  Y+S YGGT      W C F+  +F      P  R  WR  +  R S S
Sbjct: 108 YNFCATKLLYTSCYGGTQLVSLIWGCIFIIFFFASVLLLPVFRTTWRNIKVTRKSSS 164


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,436,877
Number of Sequences: 27780
Number of extensions: 159945
Number of successful extensions: 471
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 471
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 641068680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)