Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20294
         (406 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    23   1.7  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    21   5.3  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    20   9.3  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    20   9.3  

>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 22.6 bits (46), Expect = 1.7
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -1

Query: 109 CNAIFSGKRNKNTRESSIINN 47
           C     G+R+  TRES I NN
Sbjct: 345 CKTRIIGRRSWVTRESQICNN 365


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 21.0 bits (42), Expect = 5.3
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -3

Query: 395 SPISSHSLYRSXRSP 351
           SP++SHSLY     P
Sbjct: 269 SPLTSHSLYYVNMEP 283


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 20.2 bits (40), Expect = 9.3
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = -3

Query: 299 ALIW*AWRISGINP 258
           AL W  W  S INP
Sbjct: 343 ALTWLGWINSAINP 356


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 20.2 bits (40), Expect = 9.3
 Identities = 6/9 (66%), Positives = 6/9 (66%)
 Frame = +1

Query: 175 PPPQDRPGW 201
           PPP D  GW
Sbjct: 666 PPPDDISGW 674


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,340
Number of Sequences: 438
Number of extensions: 1974
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10132494
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)