Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20294
(406 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g73165.1 68414.m08464 Clavata3 / ESR-Related-1 (CLE1) Clavata... 29 1.2
At3g54320.1 68416.m06003 ovule development protein, putative sim... 29 1.6
At3g27930.1 68416.m03486 expressed protein 28 2.7
At5g03570.1 68418.m00315 iron-responsive transporter-related sim... 27 3.6
At2g29670.1 68415.m03606 expressed protein 27 3.6
At1g71710.1 68414.m08289 inositol polyphosphate 5-phosphatase, p... 27 3.6
At1g61120.1 68414.m06886 terpene synthase/cyclase family protein... 27 6.3
At1g15520.1 68414.m01867 ABC transporter family protein similar ... 27 6.3
At5g58770.1 68418.m07361 dehydrodolichyl diphosphate synthase, p... 26 8.3
At3g54780.2 68416.m06062 zinc finger (C3HC4-type RING finger) fa... 26 8.3
At3g54780.1 68416.m06061 zinc finger (C3HC4-type RING finger) fa... 26 8.3
At3g24840.1 68416.m03116 SEC14 cytosolic factor, putative / phos... 26 8.3
At1g32730.1 68414.m04036 expressed protein 26 8.3
>At1g73165.1 68414.m08464 Clavata3 / ESR-Related-1 (CLE1)
Clavata3/ESR-Related-1 (CLE1)
Length = 74
Score = 29.1 bits (62), Expect = 1.2
Identities = 13/23 (56%), Positives = 18/23 (78%), Gaps = 1/23 (4%)
Frame = +3
Query: 126 NLMFLMALFL-CIALVRTATSRP 191
NL FL+ LFL C++L R++ SRP
Sbjct: 3 NLKFLLCLFLICVSLSRSSASRP 25
>At3g54320.1 68416.m06003 ovule development protein, putative
similar to ovule development protein aintegumenta
(GI:1209099) [Arabidopsis thaliana]
Length = 427
Score = 28.7 bits (61), Expect = 1.6
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Frame = -2
Query: 228 TP*RSDCPAPTRAVLRWRSEPVRYKG---TAPSKTLSSSIKRTVTPFSQANEIKTH 70
+P +S+ P P RA +S P K T+P+ T SSI R VT + H
Sbjct: 26 SPIQSEAPRPKRAKRAKKSSPSGDKSHNPTSPASTRRSSIYRGVTRHRWTGRFEAH 81
>At3g27930.1 68416.m03486 expressed protein
Length = 425
Score = 27.9 bits (59), Expect = 2.7
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = -2
Query: 174 SEPVRYKGTAPSKTLSSSIKRTVTPFSQANEIKTHA 67
SE R G T + S+ TVTPFS NE+ HA
Sbjct: 152 SEEYRIMGLRYGST-NLSVGATVTPFSANNELPKHA 186
>At5g03570.1 68418.m00315 iron-responsive transporter-related
similar to iron-regulated transporter IREG1 [Mus
musculus] GI:7264727
Length = 512
Score = 27.5 bits (58), Expect = 3.6
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = +1
Query: 154 FVSHWFGPPPQDRPGWRRAVRSSRSQLNVTQTTSVGFMPEMRQ 282
F+S + G P + RR++RSS+SQ T + S ++P + +
Sbjct: 231 FISVYNGVPAIVQSDERRSLRSSQSQAEETDSASSFYVPLLHE 273
>At2g29670.1 68415.m03606 expressed protein
Length = 536
Score = 27.5 bits (58), Expect = 3.6
Identities = 9/27 (33%), Positives = 20/27 (74%)
Frame = -2
Query: 204 APTRAVLRWRSEPVRYKGTAPSKTLSS 124
A + L+W ++P+ ++ ++PS+TL+S
Sbjct: 6 ASSSTFLQWTTQPIIHQSSSPSQTLAS 32
>At1g71710.1 68414.m08289 inositol polyphosphate 5-phosphatase,
putative similar to inositol polyphosphate 5-phosphatase
I [Arabidopsis thaliana] GI:10444261
Length = 664
Score = 27.5 bits (58), Expect = 3.6
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -1
Query: 88 KRNKNTRESSIINNKXIRICM 26
+RN T + INNK IR+C+
Sbjct: 112 RRNSETLRAQYINNKEIRVCV 132
>At1g61120.1 68414.m06886 terpene synthase/cyclase family protein
similar to S-linalool synthase GI:1491939 from [Clarkia
breweri][PMID: 8768373]
Length = 877
Score = 26.6 bits (56), Expect = 6.3
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = -2
Query: 216 SDCPAPTRAVLRWRSEPVRYKGTAPSKTLSSSIKRTVTPFSQANEIKTH 70
+D T+AVLRW E ++ G + L ++ T AN +TH
Sbjct: 550 NDLEGLTKAVLRWEGEELKSYGNIIFRALDDIVRET------ANTCRTH 592
>At1g15520.1 68414.m01867 ABC transporter family protein similar to
ABC1 protein GI:14331118 from [Nicotiana
plumbaginifolia]
Length = 1423
Score = 26.6 bits (56), Expect = 6.3
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +1
Query: 199 WRRAVRSSRSQLNVTQTTSVGFMP 270
W RAV +S L VT S GF+P
Sbjct: 723 WSRAVENSSETLGVTFLKSRGFLP 746
>At5g58770.1 68418.m07361 dehydrodolichyl diphosphate synthase,
putative / DEDOL-PP synthase, putative similar to
GI:796076
Length = 310
Score = 26.2 bits (55), Expect = 8.3
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = +1
Query: 145 RCSFVSHWFGPPPQDRPGWRRAVRSSRSQLNVTQTTSVGFMPE 273
R SF+S F P ++ G+R V+SS+S ++ T +PE
Sbjct: 30 RDSFLS--FSPKFEENRGFRFGVKSSKSDVSFTAAEEEETLPE 70
>At3g54780.2 68416.m06062 zinc finger (C3HC4-type RING finger)
family protein low similarity to SP|P79263
Inter-alpha-trypsin inhibitor heavy chain H4 precursor
{Sus scrofa}; contains Pfam profiles PF00097: Zinc
finger, C3HC4 type (RING finger), PF00092: von
Willebrand factor type A domain
Length = 676
Score = 26.2 bits (55), Expect = 8.3
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +3
Query: 120 WRNLMFLMALFLCIALVRTATSRPPWLAPGS 212
W+ + ++L LC L RT PP LA S
Sbjct: 5 WKKMKLALSLNLCNYLPRTLEEEPPSLALNS 35
>At3g54780.1 68416.m06061 zinc finger (C3HC4-type RING finger)
family protein low similarity to SP|P79263
Inter-alpha-trypsin inhibitor heavy chain H4 precursor
{Sus scrofa}; contains Pfam profiles PF00097: Zinc
finger, C3HC4 type (RING finger), PF00092: von
Willebrand factor type A domain
Length = 675
Score = 26.2 bits (55), Expect = 8.3
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +3
Query: 120 WRNLMFLMALFLCIALVRTATSRPPWLAPGS 212
W+ + ++L LC L RT PP LA S
Sbjct: 5 WKKMKLALSLNLCNYLPRTLEEEPPSLALNS 35
>At3g24840.1 68416.m03116 SEC14 cytosolic factor, putative /
phosphoglyceride transfer protein, putative similar to
phosphatidylinositol transfer-like protein IV
(GI:14486707) [Lotus japonicus]; similar to SEC14
CYTOSOLIC FACTOR (PHOSPHATIDYLINOSITOL/
PHOSPHATIDYLCHOLINE TRANSFER PROTEIN) GB:P46250 from
[Candida albicans] (Yeast (1996) 12(11), 1097-1105);
contains Pfam PF00650 : CRAL/TRIO domain; contains Pfam
PF03765 : CRAL/TRIO, N-terminus
Length = 579
Score = 26.2 bits (55), Expect = 8.3
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +2
Query: 215 DLHGVS*MSHRRRVLDLCQRCAKL 286
D+HGVS MS R+ DL R K+
Sbjct: 224 DVHGVSWMSFRKLAQDLVMRMQKI 247
>At1g32730.1 68414.m04036 expressed protein
Length = 327
Score = 26.2 bits (55), Expect = 8.3
Identities = 19/67 (28%), Positives = 28/67 (41%)
Frame = -2
Query: 261 SNTRRLCDIQLTP*RSDCPAPTRAVLRWRSEPVRYKGTAPSKTLSSSIKRTVTPFSQANE 82
S C I + S T+A SE +GT S T SSI++ + F+Q N
Sbjct: 52 SRAENPCPIHVLKVASTSGEKTQAPSTPSSEQKATEGTPGSTTRVSSIRQLSSNFAQFNN 111
Query: 81 IKTHANQ 61
+ + Q
Sbjct: 112 LNASSRQ 118
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,919,854
Number of Sequences: 28952
Number of extensions: 147974
Number of successful extensions: 373
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 369
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 373
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 595686720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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