Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20293
         (563 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0263 + 2136858-2137331                                          101   3e-22
12_01_0323 - 2459854-2460306                                          101   4e-22
11_01_0317 - 2365493-2365786,2365825-2365953                           97   9e-21
12_02_0996 - 25115643-25115708,25115869-25116107,25116484-251165...    28   5.9  
06_02_0227 + 13271439-13271469,13271821-13271894,13273394-132736...    27   7.8  

>01_01_0263 + 2136858-2137331
          Length = 157

 Score =  101 bits (243), Expect = 3e-22
 Identities = 48/66 (72%), Positives = 57/66 (86%)
 Frame = +3

Query: 57  MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRG 236
           MK N +VTSSRRK RK HF+APS +RRVLMS+ LS ELR K+NV+S+PIRKDDEVQVVRG
Sbjct: 1   MKRNPRVTSSRRKCRKAHFTAPSSVRRVLMSAALSSELRHKYNVRSIPIRKDDEVQVVRG 60

Query: 237 HYKGQQ 254
            YKG++
Sbjct: 61  SYKGRE 66



 Score = 97.9 bits (233), Expect = 5e-21
 Identities = 45/70 (64%), Positives = 59/70 (84%)
 Frame = +2

Query: 257 GKVMQVYRKKFVVYIERIQREKANGATAYVGIHPSKCVIVKLKMNKDRKAILDRRAKGRL 436
           GKV+QVYR+++V+++ERI REK NG+T  VGIHPSK V+ KLK++KDRKAILDR+A+GR 
Sbjct: 67  GKVVQVYRRRWVIHVERITREKVNGSTVNVGIHPSKVVVTKLKLDKDRKAILDRKARGR- 125

Query: 437 AALGKDKGKY 466
            A  K KGK+
Sbjct: 126 -AADKAKGKF 134


>12_01_0323 - 2459854-2460306
          Length = 150

 Score =  101 bits (242), Expect = 4e-22
 Identities = 48/66 (72%), Positives = 57/66 (86%)
 Frame = +3

Query: 57  MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRG 236
           MK N +VTSSRRK RK HF+APS +RRVLMS+ LS ELR K+NV+S+PIRKDDEVQVVRG
Sbjct: 1   MKRNPRVTSSRRKCRKAHFTAPSSVRRVLMSAALSTELRHKYNVRSIPIRKDDEVQVVRG 60

Query: 237 HYKGQQ 254
            YKG++
Sbjct: 61  SYKGRE 66



 Score = 97.1 bits (231), Expect = 9e-21
 Identities = 45/70 (64%), Positives = 58/70 (82%)
 Frame = +2

Query: 257 GKVMQVYRKKFVVYIERIQREKANGATAYVGIHPSKCVIVKLKMNKDRKAILDRRAKGRL 436
           GKV+QVYR+++V+++ERI REK NG+T  VGIHPSK V+ KLK++KDRKAILDR+A GR 
Sbjct: 67  GKVVQVYRRRWVIHVERITREKVNGSTVNVGIHPSKVVVTKLKLDKDRKAILDRKASGR- 125

Query: 437 AALGKDKGKY 466
            A  K KGK+
Sbjct: 126 -AADKAKGKF 134


>11_01_0317 - 2365493-2365786,2365825-2365953
          Length = 140

 Score = 97.1 bits (231), Expect = 9e-21
 Identities = 45/70 (64%), Positives = 58/70 (82%)
 Frame = +2

Query: 257 GKVMQVYRKKFVVYIERIQREKANGATAYVGIHPSKCVIVKLKMNKDRKAILDRRAKGRL 436
           GKV+QVYR+++V+++ERI REK NG+T  VGIHPSK V+ KLK++KDRKAILDR+A GR 
Sbjct: 54  GKVVQVYRRRWVIHVERITREKVNGSTVNVGIHPSKVVVTKLKLDKDRKAILDRKASGR- 112

Query: 437 AALGKDKGKY 466
            A  K KGK+
Sbjct: 113 -AADKAKGKF 121



 Score = 64.9 bits (151), Expect = 4e-11
 Identities = 37/61 (60%), Positives = 43/61 (70%), Gaps = 2/61 (3%)
 Frame = +3

Query: 57  MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNV--KSMPIRKDDEVQVV 230
           MK N +VTSSRRK RK HF+APS +RRVLMS+ LS ELR K+NV   S   R+   VQV 
Sbjct: 1   MKRNPRVTSSRRKCRKAHFTAPSSVRRVLMSAALSTELRHKYNVVRGSYKGREGKVVQVY 60

Query: 231 R 233
           R
Sbjct: 61  R 61


>12_02_0996 -
           25115643-25115708,25115869-25116107,25116484-25116577,
           25116726-25116864,25116960-25117081,25117261-25117491,
           25117583-25117644,25118335-25118461,25118890-25119183,
           25119266-25119622
          Length = 576

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 16/65 (24%), Positives = 27/65 (41%)
 Frame = +1

Query: 295 IH*EDSKRKGQWCNSICRHSPFKVCDCQVEDE*RPQSNPRSQSKGQTGCTWQRQG*IHRG 474
           +H   S+ +G      C H+  K C C +  E + Q+  R  +  Q     ++   I R 
Sbjct: 463 LHENLSQVEGHDIALCCNHNYMKQCKCSIAQEPQLQARARQNAASQQSQLHEKGRQIDRS 522

Query: 475 NCHSH 489
             HS+
Sbjct: 523 AVHSN 527


>06_02_0227 +
           13271439-13271469,13271821-13271894,13273394-13273633,
           13273892-13273896,13274133-13274175,13274273-13274413
          Length = 177

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = +2

Query: 119 SFTYKASVDVLSPV*GTKTKIQCKIHAYSQRR*SSGCTWTLQRPTVGKVM 268
           ++ YK  +  L+      T +QC++  Y++   S+  T T +R   GKVM
Sbjct: 84  AYNYKYIIYGLAQCSSELTCLQCQLSLYTKLEVSNSVTDTGKRENTGKVM 133


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,830,893
Number of Sequences: 37544
Number of extensions: 283613
Number of successful extensions: 738
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 723
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 738
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1293275844
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)