BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fbS20293 (563 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 01_01_0263 + 2136858-2137331 101 3e-22 12_01_0323 - 2459854-2460306 101 4e-22 11_01_0317 - 2365493-2365786,2365825-2365953 97 9e-21 12_02_0996 - 25115643-25115708,25115869-25116107,25116484-251165... 28 5.9 06_02_0227 + 13271439-13271469,13271821-13271894,13273394-132736... 27 7.8 >01_01_0263 + 2136858-2137331 Length = 157 Score = 101 bits (243), Expect = 3e-22 Identities = 48/66 (72%), Positives = 57/66 (86%) Frame = +3 Query: 57 MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRG 236 MK N +VTSSRRK RK HF+APS +RRVLMS+ LS ELR K+NV+S+PIRKDDEVQVVRG Sbjct: 1 MKRNPRVTSSRRKCRKAHFTAPSSVRRVLMSAALSSELRHKYNVRSIPIRKDDEVQVVRG 60 Query: 237 HYKGQQ 254 YKG++ Sbjct: 61 SYKGRE 66 Score = 97.9 bits (233), Expect = 5e-21 Identities = 45/70 (64%), Positives = 59/70 (84%) Frame = +2 Query: 257 GKVMQVYRKKFVVYIERIQREKANGATAYVGIHPSKCVIVKLKMNKDRKAILDRRAKGRL 436 GKV+QVYR+++V+++ERI REK NG+T VGIHPSK V+ KLK++KDRKAILDR+A+GR Sbjct: 67 GKVVQVYRRRWVIHVERITREKVNGSTVNVGIHPSKVVVTKLKLDKDRKAILDRKARGR- 125 Query: 437 AALGKDKGKY 466 A K KGK+ Sbjct: 126 -AADKAKGKF 134 >12_01_0323 - 2459854-2460306 Length = 150 Score = 101 bits (242), Expect = 4e-22 Identities = 48/66 (72%), Positives = 57/66 (86%) Frame = +3 Query: 57 MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRG 236 MK N +VTSSRRK RK HF+APS +RRVLMS+ LS ELR K+NV+S+PIRKDDEVQVVRG Sbjct: 1 MKRNPRVTSSRRKCRKAHFTAPSSVRRVLMSAALSTELRHKYNVRSIPIRKDDEVQVVRG 60 Query: 237 HYKGQQ 254 YKG++ Sbjct: 61 SYKGRE 66 Score = 97.1 bits (231), Expect = 9e-21 Identities = 45/70 (64%), Positives = 58/70 (82%) Frame = +2 Query: 257 GKVMQVYRKKFVVYIERIQREKANGATAYVGIHPSKCVIVKLKMNKDRKAILDRRAKGRL 436 GKV+QVYR+++V+++ERI REK NG+T VGIHPSK V+ KLK++KDRKAILDR+A GR Sbjct: 67 GKVVQVYRRRWVIHVERITREKVNGSTVNVGIHPSKVVVTKLKLDKDRKAILDRKASGR- 125 Query: 437 AALGKDKGKY 466 A K KGK+ Sbjct: 126 -AADKAKGKF 134 >11_01_0317 - 2365493-2365786,2365825-2365953 Length = 140 Score = 97.1 bits (231), Expect = 9e-21 Identities = 45/70 (64%), Positives = 58/70 (82%) Frame = +2 Query: 257 GKVMQVYRKKFVVYIERIQREKANGATAYVGIHPSKCVIVKLKMNKDRKAILDRRAKGRL 436 GKV+QVYR+++V+++ERI REK NG+T VGIHPSK V+ KLK++KDRKAILDR+A GR Sbjct: 54 GKVVQVYRRRWVIHVERITREKVNGSTVNVGIHPSKVVVTKLKLDKDRKAILDRKASGR- 112 Query: 437 AALGKDKGKY 466 A K KGK+ Sbjct: 113 -AADKAKGKF 121 Score = 64.9 bits (151), Expect = 4e-11 Identities = 37/61 (60%), Positives = 43/61 (70%), Gaps = 2/61 (3%) Frame = +3 Query: 57 MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNV--KSMPIRKDDEVQVV 230 MK N +VTSSRRK RK HF+APS +RRVLMS+ LS ELR K+NV S R+ VQV Sbjct: 1 MKRNPRVTSSRRKCRKAHFTAPSSVRRVLMSAALSTELRHKYNVVRGSYKGREGKVVQVY 60 Query: 231 R 233 R Sbjct: 61 R 61 >12_02_0996 - 25115643-25115708,25115869-25116107,25116484-25116577, 25116726-25116864,25116960-25117081,25117261-25117491, 25117583-25117644,25118335-25118461,25118890-25119183, 25119266-25119622 Length = 576 Score = 27.9 bits (59), Expect = 5.9 Identities = 16/65 (24%), Positives = 27/65 (41%) Frame = +1 Query: 295 IH*EDSKRKGQWCNSICRHSPFKVCDCQVEDE*RPQSNPRSQSKGQTGCTWQRQG*IHRG 474 +H S+ +G C H+ K C C + E + Q+ R + Q ++ I R Sbjct: 463 LHENLSQVEGHDIALCCNHNYMKQCKCSIAQEPQLQARARQNAASQQSQLHEKGRQIDRS 522 Query: 475 NCHSH 489 HS+ Sbjct: 523 AVHSN 527 >06_02_0227 + 13271439-13271469,13271821-13271894,13273394-13273633, 13273892-13273896,13274133-13274175,13274273-13274413 Length = 177 Score = 27.5 bits (58), Expect = 7.8 Identities = 15/50 (30%), Positives = 26/50 (52%) Frame = +2 Query: 119 SFTYKASVDVLSPV*GTKTKIQCKIHAYSQRR*SSGCTWTLQRPTVGKVM 268 ++ YK + L+ T +QC++ Y++ S+ T T +R GKVM Sbjct: 84 AYNYKYIIYGLAQCSSELTCLQCQLSLYTKLEVSNSVTDTGKRENTGKVM 133 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 13,830,893 Number of Sequences: 37544 Number of extensions: 283613 Number of successful extensions: 738 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 723 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 738 length of database: 14,793,348 effective HSP length: 78 effective length of database: 11,864,916 effective search space used: 1293275844 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -